Click here to switch to the map view.

The map label for this gene is nusB

Identifier: 225852286

GI number: 225852286

Start: 775609

End: 776124

Strand: Direct

Name: nusB

Synonym: BMEA_A0809

Alternate gene names: 225852286

Gene position: 775609-776124 (Clockwise)

Preceding gene: 225852285

Following gene: 225852287

Centisome position: 36.49

GC content: 59.11

Gene sequence:

>516_bases
ATGAATTCTATCCCTGAAGGCCGTCCGACTCCCAATCTGCCGCGAACTGCGAACAAGCGTGGTGTTGCGCGCCTTGCCGC
CGTGCAGGCGCTCTTTCAGATGGATGTTGCCGGTACGGGTGTTATGGAAGTCGTGGCCGAATACGAAGCCTTCCGGCTCG
GCAAGGAAGTGGACGGCACCCAATATCTCGATGCCGATCCGCAATGGTTCCGCGCCATTGTGGCGGGCGTGGTCGAAGAC
CAGTTGAAGCTCGATCCGATGATCCATCAGGCTTTGACGGAAGACTGGCCGCTGTCGCGCCTCGATTCGACGCTGCGAGC
CATTTTGCGCGCCGGTGCATGGGAATTGAAGGCGCGCAAGGATGTGCCAACGGCGGTAATCGTTTCGGAATATGTCGATA
TCGCCAAGGCCTTCTATACGGAAGACGAACCGAAGCTGGTCAATGCCGTGCTGGATCGGCTTGCCTTGGTCATTCGCGGC
GAAAGCCGCGGGGCCAAACCGCGGCATAAGAGCTGA

Upstream 100 bases:

>100_bases
GGGTGCGCGCCCGCCGCGAAGACAAGGACAAGGGTGGCTTTGCAGCCCGTGCCGCATTGACTATGATCGGCCTGCGCAAA
AAATTCGGAGCCTGATCGTT

Downstream 100 bases:

>100_bases
TCTGCGGGCATCATAACAGGTTGCAAGGGCTGCGAGAAATCGCGGCCCTTCTTTCTTTGCGGGCAGCAAAGAACAGCTTG
ACGTTTGTGAAATTGTTTCG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MNSIPEGRPTPNLPRTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVED
QLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLALVIRG
ESRGAKPRHKS

Sequences:

>Translated_171_residues
MNSIPEGRPTPNLPRTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVED
QLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLALVIRG
ESRGAKPRHKS
>Mature_171_residues
MNSIPEGRPTPNLPRTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVED
QLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLALVIRG
ESRGAKPRHKS

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=134, Percent_Identity=35.8208955223881, Blast_Score=70, Evalue=9e-14,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_BRUA1 (B2S518)

Other databases:

- EMBL:   CP000887
- RefSeq:   YP_001934739.1
- ProteinModelPortal:   B2S518
- SMR:   B2S518
- GeneID:   6327900
- GenomeReviews:   CP000887_GR
- KEGG:   bmc:BAbS19_I07410
- HOGENOM:   HBG734409
- OMA:   AFFRDIV
- ProtClustDB:   PRK00202
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 18951; Mature: 18951

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIPEGRPTPNLPRTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDGT
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
QYLDADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCC
DVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLALVIRGESRGAKPRHKS
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNSIPEGRPTPNLPRTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDGT
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
QYLDADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCC
DVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLALVIRGESRGAKPRHKS
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA