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The map label for this gene is yliC [C]

Identifier: 225686846

GI number: 225686846

Start: 1058087

End: 1059031

Strand: Reverse

Name: yliC [C]

Synonym: BMEA_B1085

Alternate gene names: 225686846

Gene position: 1059031-1058087 (Counterclockwise)

Preceding gene: 225686847

Following gene: 225686845

Centisome position: 89.33

GC content: 58.73

Gene sequence:

>945_bases
ATGACAGCTCTTATTCTAAAACGTGTGGCACAAGCGATCCCGGTAATGCTGATCGTTGCCATACTGACCTTCCTGCTGAT
GAAACTGCTGCCGGGCGATCCCGCCATCCTGATCGCTGGCGACGGTGCAAGCCCCGAAACGGTGGAGCGGATCAGGGTCG
AACTGGGGCTCGATCAGCCGACGGTCGTTCAGCTTGGCCAATGGCTGTGGAATCTTTTCCATTTCGATCTCGGGCGTTCG
TTTCTTCTGAGCCAGCCCGTCTCGCAGGCAATCGCAGAGCGGCTTCCCGTTACGATCTCGCTCGCGCTGCTGGCATTCGC
CATCACCATTCCGGTGGGCATCATCATGGGCGTCGTGGCAGCCTATTTGCGGGACAGCTGGTTCGACACGGGCGTGATGA
GCCTCGCACTTCTGGGCGTTTCCGTCCCCAGCTTCTGGCTCGCTATCCTTGCCGTCATCCTGTTCTCGGTGACGCTCGGC
TGGTTTCCTTCAGCGGGCTATGTTCCCTTTCTCGACAGCCCGCTTGGCTGGCTGCGGTCGCTCATTCTGCCCGCATCCAT
CCTCGCGCTTTTCCAGATCGGCTATCTGGCGCGCATGACGCGGTCGGAAATGCTGGAAGTCATGGACCAGGATTATATCC
GCACCGCCCGTTCAAAGGGCGTATCGGAATATTCCGTTCTCTCGACCCATGCATTTCGCAATGCGCTGGTCTCGGTTCTG
ACCGTATCGGGCTATATTTTCAGCCTCCTGATCGGCGGCTCAGTGGTGATCGAACAGATTTTCGCCCTGCCGGGGCTGGG
CCGCCTGCTCGTACAGGCCATTCTGGCGCGCGACCTGCCCGTCGTGCAGGGAACCATGCTGTTCCTCGGCTTCCTCTTCG
TTGCCATCAATGTGCTGGTGGACATCCTTTATACAATCGCTGATCCGAGGGTACGCTATGACTGA

Upstream 100 bases:

>100_bases
TGCCGTTTCGAACCGGGGCCGGTTCACATTTCCGGTTCGAAATGGCTCAAGCGCGTCGCTGACGACCATCAGCAGGCCCG
GCGCGCAACTCATGTGGGTG

Downstream 100 bases:

>100_bases
GCTGGCAAGCCCGACTTCCTTCTCGATGCCGGATATCGGCAAGAGCCCCGTTGTGCTGACCGCCCGACGCCTGATGCGGC
ACCGCTCATTCCGCATCGGC

Product: ABC di/oligopeptide transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MTALILKRVAQAIPVMLIVAILTFLLMKLLPGDPAILIAGDGASPETVERIRVELGLDQPTVVQLGQWLWNLFHFDLGRS
FLLSQPVSQAIAERLPVTISLALLAFAITIPVGIIMGVVAAYLRDSWFDTGVMSLALLGVSVPSFWLAILAVILFSVTLG
WFPSAGYVPFLDSPLGWLRSLILPASILALFQIGYLARMTRSEMLEVMDQDYIRTARSKGVSEYSVLSTHAFRNALVSVL
TVSGYIFSLLIGGSVVIEQIFALPGLGRLLVQAILARDLPVVQGTMLFLGFLFVAINVLVDILYTIADPRVRYD

Sequences:

>Translated_314_residues
MTALILKRVAQAIPVMLIVAILTFLLMKLLPGDPAILIAGDGASPETVERIRVELGLDQPTVVQLGQWLWNLFHFDLGRS
FLLSQPVSQAIAERLPVTISLALLAFAITIPVGIIMGVVAAYLRDSWFDTGVMSLALLGVSVPSFWLAILAVILFSVTLG
WFPSAGYVPFLDSPLGWLRSLILPASILALFQIGYLARMTRSEMLEVMDQDYIRTARSKGVSEYSVLSTHAFRNALVSVL
TVSGYIFSLLIGGSVVIEQIFALPGLGRLLVQAILARDLPVVQGTMLFLGFLFVAINVLVDILYTIADPRVRYD
>Mature_313_residues
TALILKRVAQAIPVMLIVAILTFLLMKLLPGDPAILIAGDGASPETVERIRVELGLDQPTVVQLGQWLWNLFHFDLGRSF
LLSQPVSQAIAERLPVTISLALLAFAITIPVGIIMGVVAAYLRDSWFDTGVMSLALLGVSVPSFWLAILAVILFSVTLGW
FPSAGYVPFLDSPLGWLRSLILPASILALFQIGYLARMTRSEMLEVMDQDYIRTARSKGVSEYSVLSTHAFRNALVSVLT
VSGYIFSLLIGGSVVIEQIFALPGLGRLLVQAILARDLPVVQGTMLFLGFLFVAINVLVDILYTIADPRVRYD

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1787053, Length=314, Percent_Identity=40.4458598726115, Blast_Score=234, Evalue=7e-63,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=38.7573964497041, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=39.0476190476191, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=36.8253968253968, Blast_Score=197, Evalue=5e-52,
Organism=Escherichia coli, GI1787761, Length=330, Percent_Identity=37.2727272727273, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=33.5849056603774, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1788504, Length=288, Percent_Identity=31.9444444444444, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y209_BRUME (Q8YDG7)

Other databases:

- EMBL:   AE008918
- PIR:   AG3535
- RefSeq:   NP_541186.1
- ProteinModelPortal:   Q8YDG7
- GeneID:   1197980
- GenomeReviews:   AE008918_GR
- KEGG:   bme:BMEII0209
- HOGENOM:   HBG724229
- OMA:   PVQGYTP
- PhylomeDB:   Q8YDG7
- ProtClustDB:   CLSK898745
- BioCyc:   BMEL224914:BMEII0209-MONOMER
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 34288; Mature: 34157

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1d1082b0)-; HASH(0x21677d78)-; HASH(0x216d5ea8)-; HASH(0x20bfbf24)-; HASH(0x2065f6d4)-; HASH(0x215aa68c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALILKRVAQAIPVMLIVAILTFLLMKLLPGDPAILIAGDGASPETVERIRVELGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCH
TVVQLGQWLWNLFHFDLGRSFLLSQPVSQAIAERLPVTISLALLAFAITIPVGIIMGVVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AYLRDSWFDTGVMSLALLGVSVPSFWLAILAVILFSVTLGWFPSAGYVPFLDSPLGWLRS
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
LILPASILALFQIGYLARMTRSEMLEVMDQDYIRTARSKGVSEYSVLSTHAFRNALVSVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TVSGYIFSLLIGGSVVIEQIFALPGLGRLLVQAILARDLPVVQGTMLFLGFLFVAINVLV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
DILYTIADPRVRYD
HHHHHHCCCCCCCH
>Mature Secondary Structure 
TALILKRVAQAIPVMLIVAILTFLLMKLLPGDPAILIAGDGASPETVERIRVELGLDQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCH
TVVQLGQWLWNLFHFDLGRSFLLSQPVSQAIAERLPVTISLALLAFAITIPVGIIMGVVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AYLRDSWFDTGVMSLALLGVSVPSFWLAILAVILFSVTLGWFPSAGYVPFLDSPLGWLRS
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
LILPASILALFQIGYLARMTRSEMLEVMDQDYIRTARSKGVSEYSVLSTHAFRNALVSVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TVSGYIFSLLIGGSVVIEQIFALPGLGRLLVQAILARDLPVVQGTMLFLGFLFVAINVLV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
DILYTIADPRVRYD
HHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688