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The map label for this gene is ydfH [H]

Identifier: 225686576

GI number: 225686576

Start: 777200

End: 777973

Strand: Direct

Name: ydfH [H]

Synonym: BMEA_B0792

Alternate gene names: 225686576

Gene position: 777200-777973 (Clockwise)

Preceding gene: 225686572

Following gene: 225686577

Centisome position: 65.56

GC content: 55.94

Gene sequence:

>774_bases
ATGAGAGGACGCAGTGCGCAACCGGCGCTTGAAAAACAGAAAAATGTGGCGGACACCGAGAGCGGTGCGGCCACAGGCGT
AAAGGCGCGCACCTTGCCTTCGCGGGTGGCCGGGGTACAGCGCGTCACGACAGCCAAGCTCATCTATCATGAACTGCAAC
AGCAAATTATCCGGATGGAGCTTCTTCCCGGCACACCGCTCAATGAAAAGGCGTTGACCGAAAAATATGGCGTCAGCCGC
ACGCCGGTACGGGAAGCATTGATCCGCCTTGCCGAAGATCGTCTGGTCGATGTTTTCCCGCAATCGGGTACATTCGTGGC
GCGCATTCCGGTTGATGCTATCCCGGAAGCTGTTGTCATACGACAGGCGCTGGAGGGAGAAACGGCAGAAAGGGCTGCCG
CCAATTCAACCGCAGCCGCTATCGAGAAGCTGGACGAGTTGATCCACTTGCAGACTTTTTATGCCCGCAAGGACAAACCC
GGTCCATTTCATGAAACCGATGACGCTTTCCACGAAACAATCGCGGAAATTGCTGGCTATCCCGGCATTTGGCAGCATCT
CAAGCCGGTGAAAATGCAGATTGACCGCGCCCGCCGCATGACCATGCCGATTCTCGGGCGAATGGAGCAGGTGTTGCGTG
AACATCATGCCATTCGCGATGCCATCTCGGCCCGTGATGTCCATGCCGCGCGCGAAGCCATGAAACATCATTTAAGTGCT
GTTTTGCCGGATATTGACGAGTTGCGCAAAAGCCGTCCGGACTATTTTGCTTGA

Upstream 100 bases:

>100_bases
TCCAGCCAGATCAAAATGCACTCTAATCGTGCATTCTGAAAGATGATGATCGGATCCGTAAAACCAGCGCGTGGCAGACG
GATTAAAAATGGGAATTTGG

Downstream 100 bases:

>100_bases
TAGCTGATAGGCAGGCGTTTTTCCCTAACAATCAAAAGAACATGGCGAGGAGAGGATTGAATGCGTCAGGCATGGAGATG
GTTTGGGCCGGAAGCTGGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MRGRSAQPALEKQKNVADTESGAATGVKARTLPSRVAGVQRVTTAKLIYHELQQQIIRMELLPGTPLNEKALTEKYGVSR
TPVREALIRLAEDRLVDVFPQSGTFVARIPVDAIPEAVVIRQALEGETAERAAANSTAAAIEKLDELIHLQTFYARKDKP
GPFHETDDAFHETIAEIAGYPGIWQHLKPVKMQIDRARRMTMPILGRMEQVLREHHAIRDAISARDVHAAREAMKHHLSA
VLPDIDELRKSRPDYFA

Sequences:

>Translated_257_residues
MRGRSAQPALEKQKNVADTESGAATGVKARTLPSRVAGVQRVTTAKLIYHELQQQIIRMELLPGTPLNEKALTEKYGVSR
TPVREALIRLAEDRLVDVFPQSGTFVARIPVDAIPEAVVIRQALEGETAERAAANSTAAAIEKLDELIHLQTFYARKDKP
GPFHETDDAFHETIAEIAGYPGIWQHLKPVKMQIDRARRMTMPILGRMEQVLREHHAIRDAISARDVHAAREAMKHHLSA
VLPDIDELRKSRPDYFA
>Mature_257_residues
MRGRSAQPALEKQKNVADTESGAATGVKARTLPSRVAGVQRVTTAKLIYHELQQQIIRMELLPGTPLNEKALTEKYGVSR
TPVREALIRLAEDRLVDVFPQSGTFVARIPVDAIPEAVVIRQALEGETAERAAANSTAAAIEKLDELIHLQTFYARKDKP
GPFHETDDAFHETIAEIAGYPGIWQHLKPVKMQIDRARRMTMPILGRMEQVLREHHAIRDAISARDVHAAREAMKHHLSA
VLPDIDELRKSRPDYFA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=210, Percent_Identity=34.2857142857143, Blast_Score=139, Evalue=1e-34,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28725; Mature: 28725

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGRSAQPALEKQKNVADTESGAATGVKARTLPSRVAGVQRVTTAKLIYHELQQQIIRME
CCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPGTPLNEKALTEKYGVSRTPVREALIRLAEDRLVDVFPQSGTFVARIPVDAIPEAVVI
HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHH
RQALEGETAERAAANSTAAAIEKLDELIHLQTFYARKDKPGPFHETDDAFHETIAEIAGY
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
PGIWQHLKPVKMQIDRARRMTMPILGRMEQVLREHHAIRDAISARDVHAAREAMKHHLSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLPDIDELRKSRPDYFA
HCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MRGRSAQPALEKQKNVADTESGAATGVKARTLPSRVAGVQRVTTAKLIYHELQQQIIRME
CCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPGTPLNEKALTEKYGVSRTPVREALIRLAEDRLVDVFPQSGTFVARIPVDAIPEAVVI
HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHH
RQALEGETAERAAANSTAAAIEKLDELIHLQTFYARKDKPGPFHETDDAFHETIAEIAGY
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
PGIWQHLKPVKMQIDRARRMTMPILGRMEQVLREHHAIRDAISARDVHAAREAMKHHLSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLPDIDELRKSRPDYFA
HCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]