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The map label for this gene is potC [H]

Identifier: 225686573

GI number: 225686573

Start: 769745

End: 770587

Strand: Reverse

Name: potC [H]

Synonym: BMEA_B0786

Alternate gene names: 225686573

Gene position: 770587-769745 (Counterclockwise)

Preceding gene: 225686574

Following gene: 225686571

Centisome position: 65.0

GC content: 53.02

Gene sequence:

>843_bases
ATGATCAGAGATACTTCCACAGGTGCCAAACTCTGGATTGCAGCCGTGTGGGCTGTTGTGATCTTCTTCGTGATCAACCT
GACGGCAATGATTGCAACCGTTGTTCTGTCATCTTTTTCGACAAGATGGCTTGGCACCTGGTTGCCCGCCGGGCTTACCA
CAAAATGGTATTATACAGCCTGGAGCGAATTCCAGCTTCATGATGTCCTGATCGTTACCTTTCAGATTGTATTCACAGTG
GTGATCTTGTCCGGGCTGTTGGGTGTCACGGCGGCATATGCCATGGCGCGGCGTAATTTTCCCGGCCGCAACATTGTCAT
GCTCCTGTTTCTGCTGCCCTTGCTGGTGCCGCCAATTACGTTTGGCATTCCATTGGCGACGGTCCTCTATCAGGCAGGGA
TCGGTGGCACATTCTGGGGTGTCGTGCTTGCCAACCTTGTACCAACGGTTCCATTCGTCATTCTCGTCATGATCCCCTTC
ATCGAACAGGTCGATCCAAAAGTGGAAGCTGCCGCGCGCGTTTTTGGCGCCAACACCTTCCAACTGTTTCGCTATGTTTT
GTTGCCGATGCTGCTGCCGGGCATCTTGGCTGCGTTACTGCTTGTGCTGGTGCGTACGGTCGCGATGTTCGAGCTGACAT
TCCTTACTGCCGGGCCAACCAGCCAGACGCTCGTGGTTGCACTCTATTATTCCGTATTCGCATCCGGTGTGCGTTCGGTT
CAGTCCATTGATGCGATGGCAGTCATATACATGATCACCACACTTATCTGGCTCCTGCTGGCTTTGCGCTTCGTGAACCC
GACACAGATCGTTGCGCGCGCAAAATCCCAAAACACCAACTAA

Upstream 100 bases:

>100_bases
CGCGATGATTATGGCCGCCGTGCAGCTTGCCATCGTTGTTCTGGTGCTCGGTATCCGAAGCCTGTTCTACCGTGGTGCGA
CAAGCGGGGGTAAGGGATAA

Downstream 100 bases:

>100_bases
ATCCGGAAAGACCCCTGCGGATGGATGCTGGGGCTGAAAGCCAGGGGAGGGGAAATTGGGAGTAAGGCAAAAATAGTATG
AAGAATGTGGTTGCCGCAGC

Product: ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MIRDTSTGAKLWIAAVWAVVIFFVINLTAMIATVVLSSFSTRWLGTWLPAGLTTKWYYTAWSEFQLHDVLIVTFQIVFTV
VILSGLLGVTAAYAMARRNFPGRNIVMLLFLLPLLVPPITFGIPLATVLYQAGIGGTFWGVVLANLVPTVPFVILVMIPF
IEQVDPKVEAAARVFGANTFQLFRYVLLPMLLPGILAALLLVLVRTVAMFELTFLTAGPTSQTLVVALYYSVFASGVRSV
QSIDAMAVIYMITTLIWLLLALRFVNPTQIVARAKSQNTN

Sequences:

>Translated_280_residues
MIRDTSTGAKLWIAAVWAVVIFFVINLTAMIATVVLSSFSTRWLGTWLPAGLTTKWYYTAWSEFQLHDVLIVTFQIVFTV
VILSGLLGVTAAYAMARRNFPGRNIVMLLFLLPLLVPPITFGIPLATVLYQAGIGGTFWGVVLANLVPTVPFVILVMIPF
IEQVDPKVEAAARVFGANTFQLFRYVLLPMLLPGILAALLLVLVRTVAMFELTFLTAGPTSQTLVVALYYSVFASGVRSV
QSIDAMAVIYMITTLIWLLLALRFVNPTQIVARAKSQNTN
>Mature_280_residues
MIRDTSTGAKLWIAAVWAVVIFFVINLTAMIATVVLSSFSTRWLGTWLPAGLTTKWYYTAWSEFQLHDVLIVTFQIVFTV
VILSGLLGVTAAYAMARRNFPGRNIVMLLFLLPLLVPPITFGIPLATVLYQAGIGGTFWGVVLANLVPTVPFVILVMIPF
IEQVDPKVEAAARVFGANTFQLFRYVLLPMLLPGILAALLLVLVRTVAMFELTFLTAGPTSQTLVVALYYSVFASGVRSV
QSIDAMAVIYMITTLIWLLLALRFVNPTQIVARAKSQNTN

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=248, Percent_Identity=25, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788764, Length=159, Percent_Identity=30.188679245283, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI87082099, Length=209, Percent_Identity=26.3157894736842, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30807; Mature: 30807

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]