Click here to switch to the map view.

The map label for this gene is nikA [H]

Identifier: 225686571

GI number: 225686571

Start: 765868

End: 767448

Strand: Reverse

Name: nikA [H]

Synonym: BMEA_B0783

Alternate gene names: 225686571

Gene position: 767448-765868 (Counterclockwise)

Preceding gene: 225686573

Following gene: 225686570

Centisome position: 64.74

GC content: 54.59

Gene sequence:

>1581_bases
ATGTTGACGGATAGGTTGCGCGGGCTGATACTCGCATTTGCTTTTGTTTCTGTAGCGTTTGTTTCCGGCGCTCATGCAGA
TCCAAAGCTGAATTTTTCCTGGCCGGTGAATGTAGGGCCGCTCAATCCGCACCTTTATTCTCCGAACCAGATGTTTGCCC
AGAACATGGTTTACGAGCCGCTGGTTCATTATAATGCTGACGGCACCGTTGGCCCCTGGCTGGCAGAATCCTGGGAAGCG
TCTCAGGATGGCCGATCCTACACATTCAAGCTTCGGGAGGACGTCAAGTTCTCGAATGGCGAGGTTTTCGATGCGGCTGC
GGTCAAGGCAAATATTGATACCGTATTGCAAAACCGCCCACGTCATAACTGGCTCGAACTTGTTAACCAGATGGTCTCTG
CCGAGGTTGTCGGTCCTTACAAGGTGCGGATTAATCTCAAAAAACCTTATTACCCGTTATTGCAGGAGCTTTCCCTGCCG
CGCCCCTTCCGCTTCATTGCCCCGTCGCAGTTCAAAAATGGCGGCACCGCAGATGGCATTGTGGCGCCGATTGGTACGGG
TCCGTGGAAATTGACCGAGACCAAACTTGGCGAGCACGACGTATTTACCCGCAATGATAGCTACTGGGGTCCCAAGCCTG
CTTATGAGCAGATAACTGTCAAGGTGATACCCGATCCGAATACACGGGCGATTGCCTTCGAGGCTGGCGAAATAGACCTG
ATCTATGGAACGGAAGGGCCGATTTCCCCCGATACTTTCGAGCGCTTCCAGAAAATGGGCATCTATAATACTGAGCTTTC
GGAGCCGTTAGAAACGTGCGTTTTGGCGATCAACACCAATCACGGCGCAACAAAAGACCTCGCTGTCCGCAAGGCCATCA
ATCATGCAGTCGATAAGGACACGATGATTGCCACCGTGCTCTACGGGACACAGAAGCGTGCAGATACCCTGTTTGCCGAT
AATGTTCCCTACGCCAATATCGGCCTGAAGCCTTATGCTTTCGACCCGGCTCTGGCTGCCCGGCTTCTGGATGAAGCCGG
ATGGACAGCCAAGGCAAGCGGCGATATCCGGGAGAAGGATGGGCAGCCTCTGGCGATCGAGTTGTGCTTCATCGGCACGG
ATGCGATCAGCAAATCGATGGCCGAGATCGTGCAGGCGGATCTGCGTAAGGTCGGTATCGATGTCAAGCTGACGGGCGAG
GAGGAAAGCAGCATCTATGCTCGCCAGCGCGATGGTCGTTTCGATATGATTTTCAACCAGACCTGGGGTGCGCCCTACGA
TCCGCACGCTTTTGTCAGCTCCATGCGCGTTCCCTCCCATGCCGATTATCAGGCGCAGCTCGGCCTGCCGGACAAGGCGA
AAATCGATGCGGAGATCGGTCAGGTTCTTGTCTCGACTGATGAGACGGCAAGGCAGGCGCTTTACAAGGATATCCTGACC
CGTCTTCACGAGGAAGCGGTTTACCTTCCGCTCACCTCTGTCACCGCGATGGCGGTTGCGAAACCTGAGGTCGGCAAAAT
CACATTCGGAGCGATGTCGAGCGAGATCCCCTTTGAGAAACTGACCCCGAAGGCGAACTGA

Upstream 100 bases:

>100_bases
TGCGCTCTAATGAAATTGACATGTCGCCGTTGACTCTGACTGTATATGATGTTTTTAGCAAATAATCATACTTACTACTT
GATTCATTAGAGGCTTATAG

Downstream 100 bases:

>100_bases
GGTGTTCGCCTTCATTATCCGCCGGGTGATCCTGCTTGTCCCGATGTTGTTCGGGGCATCGCTGGTCATTTTCCTGATGC
TGCGGCTTGGCCCGAGCGAC

Product: nickel ABC transporter periplasmic nickel-binding protein

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MLTDRLRGLILAFAFVSVAFVSGAHADPKLNFSWPVNVGPLNPHLYSPNQMFAQNMVYEPLVHYNADGTVGPWLAESWEA
SQDGRSYTFKLREDVKFSNGEVFDAAAVKANIDTVLQNRPRHNWLELVNQMVSAEVVGPYKVRINLKKPYYPLLQELSLP
RPFRFIAPSQFKNGGTADGIVAPIGTGPWKLTETKLGEHDVFTRNDSYWGPKPAYEQITVKVIPDPNTRAIAFEAGEIDL
IYGTEGPISPDTFERFQKMGIYNTELSEPLETCVLAINTNHGATKDLAVRKAINHAVDKDTMIATVLYGTQKRADTLFAD
NVPYANIGLKPYAFDPALAARLLDEAGWTAKASGDIREKDGQPLAIELCFIGTDAISKSMAEIVQADLRKVGIDVKLTGE
EESSIYARQRDGRFDMIFNQTWGAPYDPHAFVSSMRVPSHADYQAQLGLPDKAKIDAEIGQVLVSTDETARQALYKDILT
RLHEEAVYLPLTSVTAMAVAKPEVGKITFGAMSSEIPFEKLTPKAN

Sequences:

>Translated_526_residues
MLTDRLRGLILAFAFVSVAFVSGAHADPKLNFSWPVNVGPLNPHLYSPNQMFAQNMVYEPLVHYNADGTVGPWLAESWEA
SQDGRSYTFKLREDVKFSNGEVFDAAAVKANIDTVLQNRPRHNWLELVNQMVSAEVVGPYKVRINLKKPYYPLLQELSLP
RPFRFIAPSQFKNGGTADGIVAPIGTGPWKLTETKLGEHDVFTRNDSYWGPKPAYEQITVKVIPDPNTRAIAFEAGEIDL
IYGTEGPISPDTFERFQKMGIYNTELSEPLETCVLAINTNHGATKDLAVRKAINHAVDKDTMIATVLYGTQKRADTLFAD
NVPYANIGLKPYAFDPALAARLLDEAGWTAKASGDIREKDGQPLAIELCFIGTDAISKSMAEIVQADLRKVGIDVKLTGE
EESSIYARQRDGRFDMIFNQTWGAPYDPHAFVSSMRVPSHADYQAQLGLPDKAKIDAEIGQVLVSTDETARQALYKDILT
RLHEEAVYLPLTSVTAMAVAKPEVGKITFGAMSSEIPFEKLTPKAN
>Mature_526_residues
MLTDRLRGLILAFAFVSVAFVSGAHADPKLNFSWPVNVGPLNPHLYSPNQMFAQNMVYEPLVHYNADGTVGPWLAESWEA
SQDGRSYTFKLREDVKFSNGEVFDAAAVKANIDTVLQNRPRHNWLELVNQMVSAEVVGPYKVRINLKKPYYPLLQELSLP
RPFRFIAPSQFKNGGTADGIVAPIGTGPWKLTETKLGEHDVFTRNDSYWGPKPAYEQITVKVIPDPNTRAIAFEAGEIDL
IYGTEGPISPDTFERFQKMGIYNTELSEPLETCVLAINTNHGATKDLAVRKAINHAVDKDTMIATVLYGTQKRADTLFAD
NVPYANIGLKPYAFDPALAARLLDEAGWTAKASGDIREKDGQPLAIELCFIGTDAISKSMAEIVQADLRKVGIDVKLTGE
EESSIYARQRDGRFDMIFNQTWGAPYDPHAFVSSMRVPSHADYQAQLGLPDKAKIDAEIGQVLVSTDETARQALYKDILT
RLHEEAVYLPLTSVTAMAVAKPEVGKITFGAMSSEIPFEKLTPKAN

Specific function: Involved in a nickel transport system, probably represents the nickel binder [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789887, Length=524, Percent_Identity=63.1679389312977, Blast_Score=695, Evalue=0.0,
Organism=Escherichia coli, GI1789966, Length=492, Percent_Identity=25.609756097561, Blast_Score=128, Evalue=9e-31,
Organism=Escherichia coli, GI1787052, Length=496, Percent_Identity=24.1935483870968, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1787762, Length=469, Percent_Identity=22.6012793176972, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1787495, Length=504, Percent_Identity=24.0079365079365, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1787551, Length=465, Percent_Identity=22.5806451612903, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI87081878, Length=469, Percent_Identity=24.3070362473348, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789397, Length=477, Percent_Identity=22.2222222222222, Blast_Score=73, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011980
- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58173; Mature: 58173

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDRLRGLILAFAFVSVAFVSGAHADPKLNFSWPVNVGPLNPHLYSPNQMFAQNMVYEP
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEECCHHHHHHHHHHCC
LVHYNADGTVGPWLAESWEASQDGRSYTFKLREDVKFSNGEVFDAAAVKANIDTVLQNRP
CEEECCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHCCC
RHNWLELVNQMVSAEVVGPYKVRINLKKPYYPLLQELSLPRPFRFIAPSQFKNGGTADGI
CHHHHHHHHHHHHHEECCCEEEEEEECCCHHHHHHHCCCCCCEEECCCHHCCCCCCCCCE
VAPIGTGPWKLTETKLGEHDVFTRNDSYWGPKPAYEQITVKVIPDPNTRAIAFEAGEIDL
EEECCCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCEEE
IYGTEGPISPDTFERFQKMGIYNTELSEPLETCVLAINTNHGATKDLAVRKAINHAVDKD
EECCCCCCCHHHHHHHHHCCCCCCHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC
TMIATVLYGTQKRADTLFADNVPYANIGLKPYAFDPALAARLLDEAGWTAKASGDIREKD
CEEEEEEECCCHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCC
GQPLAIELCFIGTDAISKSMAEIVQADLRKVGIDVKLTGEEESSIYARQRDGRFDMIFNQ
CCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEECCCCCEEEEEEC
TWGAPYDPHAFVSSMRVPSHADYQAQLGLPDKAKIDAEIGQVLVSTDETARQALYKDILT
CCCCCCCHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHH
RLHEEAVYLPLTSVTAMAVAKPEVGKITFGAMSSEIPFEKLTPKAN
HHHHCEEEEEHHHHHHHHCCCCCCCEEEECCCCCCCCHHHCCCCCC
>Mature Secondary Structure
MLTDRLRGLILAFAFVSVAFVSGAHADPKLNFSWPVNVGPLNPHLYSPNQMFAQNMVYEP
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEECCHHHHHHHHHHCC
LVHYNADGTVGPWLAESWEASQDGRSYTFKLREDVKFSNGEVFDAAAVKANIDTVLQNRP
CEEECCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHCCC
RHNWLELVNQMVSAEVVGPYKVRINLKKPYYPLLQELSLPRPFRFIAPSQFKNGGTADGI
CHHHHHHHHHHHHHEECCCEEEEEEECCCHHHHHHHCCCCCCEEECCCHHCCCCCCCCCE
VAPIGTGPWKLTETKLGEHDVFTRNDSYWGPKPAYEQITVKVIPDPNTRAIAFEAGEIDL
EEECCCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCEEE
IYGTEGPISPDTFERFQKMGIYNTELSEPLETCVLAINTNHGATKDLAVRKAINHAVDKD
EECCCCCCCHHHHHHHHHCCCCCCHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC
TMIATVLYGTQKRADTLFADNVPYANIGLKPYAFDPALAARLLDEAGWTAKASGDIREKD
CEEEEEEECCCHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCC
GQPLAIELCFIGTDAISKSMAEIVQADLRKVGIDVKLTGEEESSIYARQRDGRFDMIFNQ
CCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEECCCCCEEEEEEC
TWGAPYDPHAFVSSMRVPSHADYQAQLGLPDKAKIDAEIGQVLVSTDETARQALYKDILT
CCCCCCCHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHH
RLHEEAVYLPLTSVTAMAVAKPEVGKITFGAMSSEIPFEKLTPKAN
HHHHCEEEEEHHHHHHHHCCCCCCCEEEECCCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934931; 8041620; 9278503 [H]