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The map label for this gene is lysM [H]

Identifier: 225686414

GI number: 225686414

Start: 594239

End: 594688

Strand: Direct

Name: lysM [H]

Synonym: BMEA_B0607

Alternate gene names: 225686414

Gene position: 594239-594688 (Clockwise)

Preceding gene: 225686409

Following gene: 225686415

Centisome position: 50.12

GC content: 58.0

Gene sequence:

>450_bases
ATGCCGTATCTAACATGCGTTATGACGACAGAAGCTGATCTTGCCCTCATTTCCCTGCTGCGTGAAAACGCCCGCGCTTC
CACGGCAGACCTCGCACGGCGACTCGGCGTCTCCCGCACAACCGTCCAGAGCCGTATTGAAAAACTGGAAAAGCGTGGCG
TCATCGAAGGTTATACGGTGCGTATCGCGCCGGAATTCGAGCGCGATCTGGTGCGCGCGCATGTATTGGTCACAGCCCTG
CCGAAACTTGCGCCCAAAGTGGAAACCGCGCTTCGCAGCATGATGGCGGTACGCACGCTCCATTCCGTAAGCGGCCATTT
CGACATGATCGTTGTGGTGGAAGCGCCGTCCATTCAGGAACTGGACGCGGTTCTGGACCGGATCGGCGCACTGGAAGGCG
TGGAACGCACGATGTTTTCCATCATCCTTTCCACACGCATCGACCGGTAA

Upstream 100 bases:

>100_bases
TTTTTCCCCTTGGAATGCAATTCGGATATACAAAAATCGCATAGTTTCATGCAAAAAGAAGCATGCATACTGACGATATG
ACGTTATTTGTTTGTGCAAA

Downstream 100 bases:

>100_bases
TCACGTCAAGCCTTATAGTTTTACGGCAGACCTTCGTCACCAGCCAAAAATAGACGCACATGGAAGCTATGTTTTTCACA
GAAAAATCGCCAATATTACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MPYLTCVMTTEADLALISLLRENARASTADLARRLGVSRTTVQSRIEKLEKRGVIEGYTVRIAPEFERDLVRAHVLVTAL
PKLAPKVETALRSMMAVRTLHSVSGHFDMIVVVEAPSIQELDAVLDRIGALEGVERTMFSIILSTRIDR

Sequences:

>Translated_149_residues
MPYLTCVMTTEADLALISLLRENARASTADLARRLGVSRTTVQSRIEKLEKRGVIEGYTVRIAPEFERDLVRAHVLVTAL
PKLAPKVETALRSMMAVRTLHSVSGHFDMIVVVEAPSIQELDAVLDRIGALEGVERTMFSIILSTRIDR
>Mature_148_residues
PYLTCVMTTEADLALISLLRENARASTADLARRLGVSRTTVQSRIEKLEKRGVIEGYTVRIAPEFERDLVRAHVLVTALP
KLAPKVETALRSMMAVRTLHSVSGHFDMIVVVEAPSIQELDAVLDRIGALEGVERTMFSIILSTRIDR

Specific function: In the absence or at low concentrations of lysine, activates the biosynthesis of this amino acid via the diaminopimelate pathway [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=109, Percent_Identity=27.5229357798165, Blast_Score=59, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 16558; Mature: 16426

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYLTCVMTTEADLALISLLRENARASTADLARRLGVSRTTVQSRIEKLEKRGVIEGYTV
CCEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEE
RIAPEFERDLVRAHVLVTALPKLAPKVETALRSMMAVRTLHSVSGHFDMIVVVEAPSIQE
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHH
LDAVLDRIGALEGVERTMFSIILSTRIDR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PYLTCVMTTEADLALISLLRENARASTADLARRLGVSRTTVQSRIEKLEKRGVIEGYTV
CEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEE
RIAPEFERDLVRAHVLVTALPKLAPKVETALRSMMAVRTLHSVSGHFDMIVVVEAPSIQE
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHH
LDAVLDRIGALEGVERTMFSIILSTRIDR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]