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The map label for this gene is rbfA [H]

Identifier: 225631017

GI number: 225631017

Start: 1436575

End: 1436973

Strand: Reverse

Name: rbfA [H]

Synonym: WRi_013470

Alternate gene names: 225631017

Gene position: 1436973-1436575 (Counterclockwise)

Preceding gene: 225631018

Following gene: 225631016

Centisome position: 99.38

GC content: 31.58

Gene sequence:

>399_bases
ATGAAAAAGGAAATTAGAAACCTAAAAATAGCATCGGTATTGCATAGAGCGATATCAAGAGTCCTAATGGAAGGTAAGGT
GTTCAATAAAAATGTAGCGGTATCTGACGTAAAATTAAGTAAAGATTTGAAAAAAGCAGATGTATATATTGTGTTATCTT
CATTGAATATTCAAGTAGCTGACTACTTAGATCCAGAAAAAAGACGCACTGGAGATCCTTCTGAGAATAATTGTGATATT
AACACTGTTGTTAATGAAATGAACCAGTCTGCATGGTCAATACGTAAATCTATATTGTGTTATGTTGATTTGCGATTTAT
ACCTGAACTAGTTTTCAAGCCTGACTTAGCGTTCGATAATTTTGTTAATGTAAGCAAAATATTACATAATCACACTTAA

Upstream 100 bases:

>100_bases
ATGCGGAGTATCACTAGAGGGTAATATCGATATTAAAGTTGGAGATATTTTAGAAGCTTATCAATTAGTGCAAGAAGAAA
GGGTATTATAGTAGCTGGAT

Downstream 100 bases:

>100_bases
TTAATGCATTTCAATCGTTACTTTTCATTAATGAGGTTGCACAGTTTAACGGGTTTGTGGCTTGTGCTATTTCCCAGTTT
GAGCGGTATTCTTTTAGCCT

Product: ribosomal binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKKEIRNLKIASVLHRAISRVLMEGKVFNKNVAVSDVKLSKDLKKADVYIVLSSLNIQVADYLDPEKRRTGDPSENNCDI
NTVVNEMNQSAWSIRKSILCYVDLRFIPELVFKPDLAFDNFVNVSKILHNHT

Sequences:

>Translated_132_residues
MKKEIRNLKIASVLHRAISRVLMEGKVFNKNVAVSDVKLSKDLKKADVYIVLSSLNIQVADYLDPEKRRTGDPSENNCDI
NTVVNEMNQSAWSIRKSILCYVDLRFIPELVFKPDLAFDNFVNVSKILHNHT
>Mature_132_residues
MKKEIRNLKIASVLHRAISRVLMEGKVFNKNVAVSDVKLSKDLKKADVYIVLSSLNIQVADYLDPEKRRTGDPSENNCDI
NTVVNEMNQSAWSIRKSILCYVDLRFIPELVFKPDLAFDNFVNVSKILHNHT

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15103; Mature: 15103

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEIRNLKIASVLHRAISRVLMEGKVFNKNVAVSDVKLSKDLKKADVYIVLSSLNIQVA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCEEEEEECCCEEEC
DYLDPEKRRTGDPSENNCDINTVVNEMNQSAWSIRKSILCYVDLRFIPELVFKPDLAFDN
CCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
FVNVSKILHNHT
HHHHHHHHHCCC
>Mature Secondary Structure
MKKEIRNLKIASVLHRAISRVLMEGKVFNKNVAVSDVKLSKDLKKADVYIVLSSLNIQVA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCEEEEEECCCEEEC
DYLDPEKRRTGDPSENNCDINTVVNEMNQSAWSIRKSILCYVDLRFIPELVFKPDLAFDN
CCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
FVNVSKILHNHT
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA