| Definition | Wolbachia sp. wRi, complete genome. |
|---|---|
| Accession | NC_012416 |
| Length | 1,445,873 |
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The map label for this gene is uvrA [H]
Identifier: 225630603
GI number: 225630603
Start: 946951
End: 949746
Strand: Direct
Name: uvrA [H]
Synonym: WRi_008740
Alternate gene names: 225630603
Gene position: 946951-949746 (Clockwise)
Preceding gene: 225630602
Following gene: 225630604
Centisome position: 65.49
GC content: 37.88
Gene sequence:
>2796_bases ATGGACGATTTTATCAGAGTTAAGGGCGCAAGGGAACATAATCTGCAAGGTGTAGACGTCAATATACCGAAAAATAAGCT GGTTGTTATAACTGGGCTTAGTGGTTCTGGCAAGTCTAGCCTTGCTTTTGATACAATTTATGCGGAAGGCCAACGCCGGT ACGTCGAAAGCCTATCAGCTTACGCACGTCAATTTCTCAACATTCAGGATAAACCAGATGTTGAGTCGATTACAGGCCTT TCTCCTGCAATATCTATCAACCAAAAATCTATCTCAAAAAATCCAAGGTCAACCGTTGGAACTGTTACCGAAATTTACGA TTACTTGCGCTTAGTGTATGCACGAATAGGAGTTCCTTATTCACCTGCAACTGGATTACCAATAACAAAACAAACGGTGT CTCAAATTGTAGATACTATAATTGCGTTACCTTTAGAAACTAAAATATATATACTTGCCCCTGTTGTGCGTGGTAGAAAA GGAGAACATCTCAAAGAGATATTGGAAATTAAAAGACAAGGTTACGTAAGGTTCAAAATAGATGGTGAAGTGTACAATGT AGATGACTTGCCTAAACTCGATAAGAACAAGAAACACGACGTTTTTGTGGTTGCAGATAGAATATCAATATTGGACGATA TAGGAAATCGACTGCCAAGTAGTATAGAATCCGCACTAAAACTTGGTAATGGTCTAATGTATGTAGAAATAGTAAACCTA CCTGACAACCATAATTCCGAGTATAAAAATGGTCAAATTCTGATTTTTTCAGAGAATTTTGCATGCCCCGAGTCTGGTTT CACTCTTGAGGAAATAGAACCAAGATTATTTTCTTTTAACAGCCCTTACGGTGCATGTGGTTCGTGTAATGGGCTTGGTA AAAAGCTGGCTGTTGATGTAAAGCTGATAGTGCCAGATGAAACTCTTTCAATATCTGAAGGCGCTTTAAAGCCAGTGGGA TCAATGTTCCGTCAAGTGCACACAAGTTATGGATTTTTAAAAAGTGCAATTCTATCACTGGCTGAAAATTGTAAATTTAG CCTTGATGTTCCGTGGAAGAACATAGATCAAGAAGTAAAAGATATGATACTCTTTGGCTTCGGTAAATTTCAAGGTTTGG TCAGTATCTTAGAAAACCAGATGGATTATGATGAAACGCTTGTTGAGCGATATTGCTCTGTTACTCACTGCAGAGAATGC ACTGGCTATAGATTGAGAAAAGAAGCGCTTACAGTAAAAATTGATAGCAAACATATAGGTGAAATATCAGGGCTCAGCAT CGATGAATCCCTTAAATGGTTTGAAAATTTGCCAGACAAGCTCACAGAACAACAGAAGCAAATCTCAAGTAAAATATTAA ATGAAATAATCAAGAGGCTAGCATTTTTAAAGAATGTAGGGTTGAATTACCTAACGCTTGATCGAGAATCTAGCACTCTC TCTGGCGGTGAGAGTCAGAGGATCAGACTTGCTTCACAAATTGGCTCTGGTTTAACAGGAGTGCTGTACGTGCTTGATGA ACCCTCGATAGGCCTTCATCAATGTGATAATGATCGGTTAATTGCCACACTAAAAAACTTAAGAGACATGGGTAACACTG TAATCGTTGTTGAGCATGATGAAGATACAATAATGGCTGCTGATTATGCGATTGATATTGGTCCTGGAGCTGGCGTAAAT GGTGGAAAAGTTGTTGCAGAAGGAACACCAGACCAGGTGCAAAGAAATTCAGGGAGCATAACAGGGCAATATTTGAGTGG AGAGAAAAAAATTTTAATTCCAAGGAGAAGAAAGCAAGCAACTCAGTTCATAAAAGTAATAAATGCATGTGAAAATAACT TAAAAAATGTAAACGTTAAATTTCCTATAGGGAATCTTATTTGTGTTACTGGAATATCAGGAGGAGGAAAATCAAGTTTA ATCATAGAAACGTTATATAAATATTCAGCACATAAGATACATCATTCGTCTGCAAGGTATGGCCAATGCGATAAGATAGA AGGTCTTGAATACGTAGATAAAATTATAGAAGTTGATCAGTCGCCAATTGGTAGAACTCCAGCGTCAAATCCAGCAACAT ATGTTGGTATGTTCACTCATATAAGGAATTGGTTTGCTGGTCTTCCAGAGTCAAAAGCAAGGGGATATAATATAGGCCGG TTTTCATTTAATACCAGAGGGGGAAGGTGTGAGGCTTGTAAAGGTGATGGGCACTTAAAGATAGAGATGCATTTTCTACC GGACGTTTATGTGAAGTGTGAGCAATGTAAAGGGCGAAGGTATAATCGGGAAACATTGGAAGTTACTTATAAAGAAAAAT CAATCTCTGATGTGCTTGATATGACGATAGATCAAGCTTGTGTTTTTTTTGAAAACCTTCCAATGGTAAAAGAAAAGTTG GTTTCTTTGCAGGAAGTGGGACTTGGCTATATAAAACTCGGACAGTCGTCAACAACGTTGTCTGGGGGGGAAGCACAACG AATAAAGCTATCTAAAGAGCTATCAAAACGATTTACCGGAAGAACATTGTATATTCTTGATGAACCAACAACTGGATTAC ACTTTGAAGATATAAATAACTTACTAAAAATACTCCATAGATTAGTCGATCTGGGAAACACTGTTATAGTTATCGAGCAC AATTTGCACGTTATAAAAACTGCAGATTATATAATAGACATCGGACCAGAGGGCGGAATAAAAGGCGGAGAAGTGATTGC TACTGGAACTCCAGAAGAAGTGGTAAAAATTCCAGAAAGTGTTACAGGCAGGTATCTTAAAACGTATTTATTATAA
Upstream 100 bases:
>100_bases AATTTTCCGTAACAGTTGAAAAAATCAATAGAAAATCAATATATCACTATAAATTCACGTATTTTGAGGCTATAATGGTT AATACGCTATATGGTATAAT
Downstream 100 bases:
>100_bases ACTATTTCTTAATTATATTAGGCTAGGTTGCATATTTATGATTTGGAGATAAGAATGTCAGTATATCGATACTTTAGAAG GTACGTTGAATATGGAGTTG
Product: excinuclease ABC, subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 931; Mature: 931
Protein sequence:
>931_residues MDDFIRVKGAREHNLQGVDVNIPKNKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLNIQDKPDVESITGL SPAISINQKSISKNPRSTVGTVTEIYDYLRLVYARIGVPYSPATGLPITKQTVSQIVDTIIALPLETKIYILAPVVRGRK GEHLKEILEIKRQGYVRFKIDGEVYNVDDLPKLDKNKKHDVFVVADRISILDDIGNRLPSSIESALKLGNGLMYVEIVNL PDNHNSEYKNGQILIFSENFACPESGFTLEEIEPRLFSFNSPYGACGSCNGLGKKLAVDVKLIVPDETLSISEGALKPVG SMFRQVHTSYGFLKSAILSLAENCKFSLDVPWKNIDQEVKDMILFGFGKFQGLVSILENQMDYDETLVERYCSVTHCREC TGYRLRKEALTVKIDSKHIGEISGLSIDESLKWFENLPDKLTEQQKQISSKILNEIIKRLAFLKNVGLNYLTLDRESSTL SGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQCDNDRLIATLKNLRDMGNTVIVVEHDEDTIMAADYAIDIGPGAGVN GGKVVAEGTPDQVQRNSGSITGQYLSGEKKILIPRRRKQATQFIKVINACENNLKNVNVKFPIGNLICVTGISGGGKSSL IIETLYKYSAHKIHHSSARYGQCDKIEGLEYVDKIIEVDQSPIGRTPASNPATYVGMFTHIRNWFAGLPESKARGYNIGR FSFNTRGGRCEACKGDGHLKIEMHFLPDVYVKCEQCKGRRYNRETLEVTYKEKSISDVLDMTIDQACVFFENLPMVKEKL VSLQEVGLGYIKLGQSSTTLSGGEAQRIKLSKELSKRFTGRTLYILDEPTTGLHFEDINNLLKILHRLVDLGNTVIVIEH NLHVIKTADYIIDIGPEGGIKGGEVIATGTPEEVVKIPESVTGRYLKTYLL
Sequences:
>Translated_931_residues MDDFIRVKGAREHNLQGVDVNIPKNKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLNIQDKPDVESITGL SPAISINQKSISKNPRSTVGTVTEIYDYLRLVYARIGVPYSPATGLPITKQTVSQIVDTIIALPLETKIYILAPVVRGRK GEHLKEILEIKRQGYVRFKIDGEVYNVDDLPKLDKNKKHDVFVVADRISILDDIGNRLPSSIESALKLGNGLMYVEIVNL PDNHNSEYKNGQILIFSENFACPESGFTLEEIEPRLFSFNSPYGACGSCNGLGKKLAVDVKLIVPDETLSISEGALKPVG SMFRQVHTSYGFLKSAILSLAENCKFSLDVPWKNIDQEVKDMILFGFGKFQGLVSILENQMDYDETLVERYCSVTHCREC TGYRLRKEALTVKIDSKHIGEISGLSIDESLKWFENLPDKLTEQQKQISSKILNEIIKRLAFLKNVGLNYLTLDRESSTL SGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQCDNDRLIATLKNLRDMGNTVIVVEHDEDTIMAADYAIDIGPGAGVN GGKVVAEGTPDQVQRNSGSITGQYLSGEKKILIPRRRKQATQFIKVINACENNLKNVNVKFPIGNLICVTGISGGGKSSL IIETLYKYSAHKIHHSSARYGQCDKIEGLEYVDKIIEVDQSPIGRTPASNPATYVGMFTHIRNWFAGLPESKARGYNIGR FSFNTRGGRCEACKGDGHLKIEMHFLPDVYVKCEQCKGRRYNRETLEVTYKEKSISDVLDMTIDQACVFFENLPMVKEKL VSLQEVGLGYIKLGQSSTTLSGGEAQRIKLSKELSKRFTGRTLYILDEPTTGLHFEDINNLLKILHRLVDLGNTVIVIEH NLHVIKTADYIIDIGPEGGIKGGEVIATGTPEEVVKIPESVTGRYLKTYLL >Mature_931_residues MDDFIRVKGAREHNLQGVDVNIPKNKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLNIQDKPDVESITGL SPAISINQKSISKNPRSTVGTVTEIYDYLRLVYARIGVPYSPATGLPITKQTVSQIVDTIIALPLETKIYILAPVVRGRK GEHLKEILEIKRQGYVRFKIDGEVYNVDDLPKLDKNKKHDVFVVADRISILDDIGNRLPSSIESALKLGNGLMYVEIVNL PDNHNSEYKNGQILIFSENFACPESGFTLEEIEPRLFSFNSPYGACGSCNGLGKKLAVDVKLIVPDETLSISEGALKPVG SMFRQVHTSYGFLKSAILSLAENCKFSLDVPWKNIDQEVKDMILFGFGKFQGLVSILENQMDYDETLVERYCSVTHCREC TGYRLRKEALTVKIDSKHIGEISGLSIDESLKWFENLPDKLTEQQKQISSKILNEIIKRLAFLKNVGLNYLTLDRESSTL SGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQCDNDRLIATLKNLRDMGNTVIVVEHDEDTIMAADYAIDIGPGAGVN GGKVVAEGTPDQVQRNSGSITGQYLSGEKKILIPRRRKQATQFIKVINACENNLKNVNVKFPIGNLICVTGISGGGKSSL IIETLYKYSAHKIHHSSARYGQCDKIEGLEYVDKIIEVDQSPIGRTPASNPATYVGMFTHIRNWFAGLPESKARGYNIGR FSFNTRGGRCEACKGDGHLKIEMHFLPDVYVKCEQCKGRRYNRETLEVTYKEKSISDVLDMTIDQACVFFENLPMVKEKL VSLQEVGLGYIKLGQSSTTLSGGEAQRIKLSKELSKRFTGRTLYILDEPTTGLHFEDINNLLKILHRLVDLGNTVIVIEH NLHVIKTADYIIDIGPEGGIKGGEVIATGTPEEVVKIPESVTGRYLKTYLL
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=956, Percent_Identity=53.765690376569, Blast_Score=1005, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 103325; Mature: 103325
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDFIRVKGAREHNLQGVDVNIPKNKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSA CCCCEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHH YARQFLNIQDKPDVESITGLSPAISINQKSISKNPRSTVGTVTEIYDYLRLVYARIGVPY HHHHHCCCCCCCCHHHHCCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC SPATGLPITKQTVSQIVDTIIALPLETKIYILAPVVRGRKGEHLKEILEIKRQGYVRFKI CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEE DGEVYNVDDLPKLDKNKKHDVFVVADRISILDDIGNRLPSSIESALKLGNGLMYVEIVNL CCEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCHHHHHHHHHHCCCEEEEEEEEC PDNHNSEYKNGQILIFSENFACPESGFTLEEIEPRLFSFNSPYGACGSCNGLGKKLAVDV CCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCCHHEECCCCCCCCCCCCCCCCEEEEEE KLIVPDETLSISEGALKPVGSMFRQVHTSYGFLKSAILSLAENCKFSLDVPWKNIDQEVK EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHH DMILFGFGKFQGLVSILENQMDYDETLVERYCSVTHCRECTGYRLRKEALTVKIDSKHIG HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCC EISGLSIDESLKWFENLPDKLTEQQKQISSKILNEIIKRLAFLKNVGLNYLTLDRESSTL CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC SGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQCDNDRLIATLKNLRDMGNTVIVVEHD CCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCEECCCCHHHHHHHHHHHCCCEEEEEECC EDTIMAADYAIDIGPGAGVNGGKVVAEGTPDQVQRNSGSITGQYLSGEKKILIPRRRKQA CCEEEEEEEEEECCCCCCCCCCEEEECCCHHHHHCCCCCEEEEEECCCCEEECCCHHHHH TQFIKVINACENNLKNVNVKFPIGNLICVTGISGGGKSSLIIETLYKYSAHKIHHSSARY HHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHEECCCCCC GQCDKIEGLEYVDKIIEVDQSPIGRTPASNPATYVGMFTHIRNWFAGLPESKARGYNIGR CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEE FSFNTRGGRCEACKGDGHLKIEMHFLPDVYVKCEQCKGRRYNRETLEVTYKEKSISDVLD EEECCCCCEEEEECCCCEEEEEEEECCCHHEEHHHHCCCCCCCCEEEEEECHHHHHHHHH MTIDQACVFFENLPMVKEKLVSLQEVGLGYIKLGQSSTTLSGGEAQRIKLSKELSKRFTG HHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHEEHHHHHHHHHCC RTLYILDEPTTGLHFEDINNLLKILHRLVDLGNTVIVIEHNLHVIKTADYIIDIGPEGGI CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEEEEEECCCCCC KGGEVIATGTPEEVVKIPESVTGRYLKTYLL CCCEEEECCCHHHHHHCCHHHHHHHHHHHCC >Mature Secondary Structure MDDFIRVKGAREHNLQGVDVNIPKNKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSA CCCCEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHH YARQFLNIQDKPDVESITGLSPAISINQKSISKNPRSTVGTVTEIYDYLRLVYARIGVPY HHHHHCCCCCCCCHHHHCCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC SPATGLPITKQTVSQIVDTIIALPLETKIYILAPVVRGRKGEHLKEILEIKRQGYVRFKI CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEE DGEVYNVDDLPKLDKNKKHDVFVVADRISILDDIGNRLPSSIESALKLGNGLMYVEIVNL CCEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCHHHHHHHHHHCCCEEEEEEEEC PDNHNSEYKNGQILIFSENFACPESGFTLEEIEPRLFSFNSPYGACGSCNGLGKKLAVDV CCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCCHHEECCCCCCCCCCCCCCCCEEEEEE KLIVPDETLSISEGALKPVGSMFRQVHTSYGFLKSAILSLAENCKFSLDVPWKNIDQEVK EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHH DMILFGFGKFQGLVSILENQMDYDETLVERYCSVTHCRECTGYRLRKEALTVKIDSKHIG HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCC EISGLSIDESLKWFENLPDKLTEQQKQISSKILNEIIKRLAFLKNVGLNYLTLDRESSTL CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC SGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQCDNDRLIATLKNLRDMGNTVIVVEHD CCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCEECCCCHHHHHHHHHHHCCCEEEEEECC EDTIMAADYAIDIGPGAGVNGGKVVAEGTPDQVQRNSGSITGQYLSGEKKILIPRRRKQA CCEEEEEEEEEECCCCCCCCCCEEEECCCHHHHHCCCCCEEEEEECCCCEEECCCHHHHH TQFIKVINACENNLKNVNVKFPIGNLICVTGISGGGKSSLIIETLYKYSAHKIHHSSARY HHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHEECCCCCC GQCDKIEGLEYVDKIIEVDQSPIGRTPASNPATYVGMFTHIRNWFAGLPESKARGYNIGR CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEE FSFNTRGGRCEACKGDGHLKIEMHFLPDVYVKCEQCKGRRYNRETLEVTYKEKSISDVLD EEECCCCCEEEEECCCCEEEEEEEECCCHHEEHHHHCCCCCCCCEEEEEECHHHHHHHHH MTIDQACVFFENLPMVKEKLVSLQEVGLGYIKLGQSSTTLSGGEAQRIKLSKELSKRFTG HHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHEEHHHHHHHHHCC RTLYILDEPTTGLHFEDINNLLKILHRLVDLGNTVIVIEHNLHVIKTADYIIDIGPEGGI CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEEEEEECCCCCC KGGEVIATGTPEEVVKIPESVTGRYLKTYLL CCCEEEECCCHHHHHHCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]