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The map label for this gene is cydA [H]

Identifier: 225630486

GI number: 225630486

Start: 795734

End: 797140

Strand: Reverse

Name: cydA [H]

Synonym: WRi_007360

Alternate gene names: 225630486

Gene position: 797140-795734 (Counterclockwise)

Preceding gene: 225630489

Following gene: 225630485

Centisome position: 55.13

GC content: 38.38

Gene sequence:

>1407_bases
ATGTTTAAATTTGATCCTTTATTATTAGCTCGAATTCAGTTTGCCTTCACAATAGGCTTTCACATTATATTTCCTGCTTT
CACGATCGGGCTTGCAAGTTTTCTAGCCTTTTTGGAATGGTGTTGGCTTAAGACTGGTGATACACGTTTCCGTGATGTTT
ATAAATTCTGGATCAAGATTTTTGCCGTTGCTTTTGGCATGGGAGTGGTATCTGGAGTTGTAATGTCATATCAACTTGGT
ACCAATTGGTCGATTTTTTCTGACCGCATAGCCAATGTTCTCGGCCCTCTATTTTCCTTTGAGGTTTTAACAGCCTTTTT
TCTGGAGGCATCTTTTTTGAGTATTATGCTATTTGGATGGAATAGAGTAAGTTCTCGTATGCACTTTGCTTCTACTTGTA
TTGTTGCAGTGGGAACGCTTATTTCAGCTTTTTGGATTATTGCGGCCAACAGTTGGATGCAAACACCCGCTGGATTCACG
ATTGGTGAGAATGGTCTCCTATATCCAACCAATTGGTTAGAGATTATTTTTAATCCTTCTTTCCCTTATCGCTTTATTCA
TATGGTAACAGCAGCCTATCTTACAACAGCTTTTGTGGTTGGTGGTGTAGGAGCATTTTATCTTTGGAGAAAACGACATG
CTCCTCAAGCAAGAATTATGCTTGGTATGGCAACCATTATGGTAGCTTTAGCTGCACCATTTCAGCTGTTCATGGGAGAT
AGGCATGGATTAAATACACTAAAGCATCAACCTGCTAAGATTGCTGCAATGGAAGGTATATGGGAAACCGAAAAAGGGGC
TGGCTTACTTTTATTTGCTTATCCGGATCAGCAAAATGAAATTAATCACTACGAGATAAAAATTCCTAATCTTGCCAGCT
TGATCTTAACACATGATTTTTTAGGAGAAGTAAAAGGATTAAAGGAATGGAAAAAAGAAGATAGACCACCTGTAGTATGG
GTATTCTGGTCCTTCCGTATAATGGTTGGAGTTGGAATTTTAATGATCATAATTGGGTCAGTAAGTGTTATACAGTATCT
TCGTGGCAAATTATTCCAAAGTTGTTTCTTACATGGATGGTGGATATCAATGATGCCGTCTGGGTTCATAGCGTTACTTG
CAGGTTGGTTTACTACTGAAATTGGCCGTCAACCTTACACTGTATATGGAATTATGCGCACAATTGAATCATTTTCATCT
GCGATTACCGGTCCTCAGGTTGCATGGTCTTTGATTGCATTTATCGTTATGTATACCCTTATATTTGGAGCAGGTAGTTA
CTATATTCTGAAACTTATATACAAAGGAATTCCTGTCATTAAAGAAGAAGAGCAATTTTATAAACACGGTATTGGAGCTT
CAGTGATTGATGCTGGTACATCTGGAAAGGACAACAATCATGTTTGA

Upstream 100 bases:

>100_bases
TTTCTCTCTACTTTTTCTGGATAAGGTCAATTTTGTGAAAAAATGGATTGAATTATAGGCAGATTTGGCTATTATTTGTA
ATACATGGGTATTAGGTAAA

Downstream 100 bases:

>100_bases
TTTTTCTTCCTTAATTAATTTACCCCTAATCTGGGGATTACTAATTGCCATAGCTGTTTTACTGTATATTTTAATGGATG
GGTTTGATTTAGGTATTGGT

Product: cytochrome d ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MFKFDPLLLARIQFAFTIGFHIIFPAFTIGLASFLAFLEWCWLKTGDTRFRDVYKFWIKIFAVAFGMGVVSGVVMSYQLG
TNWSIFSDRIANVLGPLFSFEVLTAFFLEASFLSIMLFGWNRVSSRMHFASTCIVAVGTLISAFWIIAANSWMQTPAGFT
IGENGLLYPTNWLEIIFNPSFPYRFIHMVTAAYLTTAFVVGGVGAFYLWRKRHAPQARIMLGMATIMVALAAPFQLFMGD
RHGLNTLKHQPAKIAAMEGIWETEKGAGLLLFAYPDQQNEINHYEIKIPNLASLILTHDFLGEVKGLKEWKKEDRPPVVW
VFWSFRIMVGVGILMIIIGSVSVIQYLRGKLFQSCFLHGWWISMMPSGFIALLAGWFTTEIGRQPYTVYGIMRTIESFSS
AITGPQVAWSLIAFIVMYTLIFGAGSYYILKLIYKGIPVIKEEEQFYKHGIGASVIDAGTSGKDNNHV

Sequences:

>Translated_468_residues
MFKFDPLLLARIQFAFTIGFHIIFPAFTIGLASFLAFLEWCWLKTGDTRFRDVYKFWIKIFAVAFGMGVVSGVVMSYQLG
TNWSIFSDRIANVLGPLFSFEVLTAFFLEASFLSIMLFGWNRVSSRMHFASTCIVAVGTLISAFWIIAANSWMQTPAGFT
IGENGLLYPTNWLEIIFNPSFPYRFIHMVTAAYLTTAFVVGGVGAFYLWRKRHAPQARIMLGMATIMVALAAPFQLFMGD
RHGLNTLKHQPAKIAAMEGIWETEKGAGLLLFAYPDQQNEINHYEIKIPNLASLILTHDFLGEVKGLKEWKKEDRPPVVW
VFWSFRIMVGVGILMIIIGSVSVIQYLRGKLFQSCFLHGWWISMMPSGFIALLAGWFTTEIGRQPYTVYGIMRTIESFSS
AITGPQVAWSLIAFIVMYTLIFGAGSYYILKLIYKGIPVIKEEEQFYKHGIGASVIDAGTSGKDNNHV
>Mature_468_residues
MFKFDPLLLARIQFAFTIGFHIIFPAFTIGLASFLAFLEWCWLKTGDTRFRDVYKFWIKIFAVAFGMGVVSGVVMSYQLG
TNWSIFSDRIANVLGPLFSFEVLTAFFLEASFLSIMLFGWNRVSSRMHFASTCIVAVGTLISAFWIIAANSWMQTPAGFT
IGENGLLYPTNWLEIIFNPSFPYRFIHMVTAAYLTTAFVVGGVGAFYLWRKRHAPQARIMLGMATIMVALAAPFQLFMGD
RHGLNTLKHQPAKIAAMEGIWETEKGAGLLLFAYPDQQNEINHYEIKIPNLASLILTHDFLGEVKGLKEWKKEDRPPVVW
VFWSFRIMVGVGILMIIIGSVSVIQYLRGKLFQSCFLHGWWISMMPSGFIALLAGWFTTEIGRQPYTVYGIMRTIESFSS
AITGPQVAWSLIAFIVMYTLIFGAGSYYILKLIYKGIPVIKEEEQFYKHGIGASVIDAGTSGKDNNHV

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=513, Percent_Identity=32.3586744639376, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI87081779, Length=316, Percent_Identity=34.8101265822785, Blast_Score=203, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52769; Mature: 52769

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKFDPLLLARIQFAFTIGFHIIFPAFTIGLASFLAFLEWCWLKTGDTRFRDVYKFWIKI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FAVAFGMGVVSGVVMSYQLGTNWSIFSDRIANVLGPLFSFEVLTAFFLEASFLSIMLFGW
HHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRVSSRMHFASTCIVAVGTLISAFWIIAANSWMQTPAGFTIGENGLLYPTNWLEIIFNPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEECCCCCCCCCCCEEEEECCC
FPYRFIHMVTAAYLTTAFVVGGVGAFYLWRKRHAPQARIMLGMATIMVALAAPFQLFMGD
CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RHGLNTLKHQPAKIAAMEGIWETEKGAGLLLFAYPDQQNEINHYEIKIPNLASLILTHDF
CCCCHHHHCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHH
LGEVKGLKEWKKEDRPPVVWVFWSFRIMVGVGILMIIIGSVSVIQYLRGKLFQSCFLHGW
HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WISMMPSGFIALLAGWFTTEIGRQPYTVYGIMRTIESFSSAITGPQVAWSLIAFIVMYTL
HHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IFGAGSYYILKLIYKGIPVIKEEEQFYKHGIGASVIDAGTSGKDNNHV
HHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure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HHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]