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The map label for this gene is cydB [H]

Identifier: 225630485

GI number: 225630485

Start: 794719

End: 795741

Strand: Reverse

Name: cydB [H]

Synonym: WRi_007350

Alternate gene names: 225630485

Gene position: 795741-794719 (Counterclockwise)

Preceding gene: 225630486

Following gene: 225630484

Centisome position: 55.04

GC content: 35.97

Gene sequence:

>1023_bases
ATGTTTGATTTTTCTTCCTTAATTAATTTACCCCTAATCTGGGGATTACTAATTGCCATAGCTGTTTTACTGTATATTTT
AATGGATGGGTTTGATTTAGGTATTGGTATTTTACTTCCTTTTGCACCGTCAGATAAATGCCGTGATCACATGATAAGCT
CAATTGCACCATTTTGGGATGGAAACGAAACATGGTTGGTACTAGGTGGTGGAGGGTTGTTTGCTGCTTTTCCTCTTGCA
TATTCAATATTAATGCCTGCTTTTTATATTCCAATCATTATTATGCTGCTTGGCCTTATAGTGCGCGGAGTATCCTTTGA
GTTTCGTTTTAAGGCAGAAGGAAAATACAGGCGATTATGGGATTATGCCTTTCATTTTGGGTCACTTGGTGCTGCATTTT
GCCAAGGCATGATTTTAGGTGCATTTATACATGGTGTAGAAGTAAACGGACGCAACTTTTCTGGTGGCCAATTTGATTGG
GCAAGTGCTTTTAGTGTAATGACAGGCATTGCTGTGATATTTGGATATGCACTTTTAGGTTCTACATGGCTCATAATGAA
GACAGAAAATATAACACAAGAATGGGCACGCAAGGTTGCTTCTTATACGCTTGGTTTTGTAGGTATTTTCATGGGACTAG
TGAGTGTAGTGACACCATTTTTAAATGAACGTATTAAAAACTTTTGGTTTAGCATGCCAAATTTTTATTATTTATTTTCT
ATTCCATTACTCACATCTTGGCTATTTTTCATGCTGTGGTTTGATCTTCAGAATACTAAACGGGAGTACCGTCCATTCTT
TCTCAGTATTGCTATTTTTTTTATGGGATATTTAGGTTTAGGAATTAGTATCTACCCATGGATTATACCTTTTCAATATA
CCATTCTGGATGCAGCCGCTTCTGGGCCAAGTTTATCTTTAATGCTCATTGTTATAATACCGCTTTTACCAATCATTTTA
ACTTACACTGGTTATTGCTATTATGTCTTTCGTGGAAAATCAAATTATGAACACACATATTAA

Upstream 100 bases:

>100_bases
TACAAAGGAATTCCTGTCATTAAAGAAGAAGAGCAATTTTATAAACACGGTATTGGAGCTTCAGTGATTGATGCTGGTAC
ATCTGGAAAGGACAACAATC

Downstream 100 bases:

>100_bases
GGAGTTAGTGACCTTATGGTTAAAACGTTACCCTTAAATCAAGCAGTCGTTCAGGCAATGGCGTCAACTCAAGAACCTTC
ATTAGCAAACCCTCCTATGG

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MFDFSSLINLPLIWGLLIAIAVLLYILMDGFDLGIGILLPFAPSDKCRDHMISSIAPFWDGNETWLVLGGGGLFAAFPLA
YSILMPAFYIPIIIMLLGLIVRGVSFEFRFKAEGKYRRLWDYAFHFGSLGAAFCQGMILGAFIHGVEVNGRNFSGGQFDW
ASAFSVMTGIAVIFGYALLGSTWLIMKTENITQEWARKVASYTLGFVGIFMGLVSVVTPFLNERIKNFWFSMPNFYYLFS
IPLLTSWLFFMLWFDLQNTKREYRPFFLSIAIFFMGYLGLGISIYPWIIPFQYTILDAAASGPSLSLMLIVIIPLLPIIL
TYTGYCYYVFRGKSNYEHTY

Sequences:

>Translated_340_residues
MFDFSSLINLPLIWGLLIAIAVLLYILMDGFDLGIGILLPFAPSDKCRDHMISSIAPFWDGNETWLVLGGGGLFAAFPLA
YSILMPAFYIPIIIMLLGLIVRGVSFEFRFKAEGKYRRLWDYAFHFGSLGAAFCQGMILGAFIHGVEVNGRNFSGGQFDW
ASAFSVMTGIAVIFGYALLGSTWLIMKTENITQEWARKVASYTLGFVGIFMGLVSVVTPFLNERIKNFWFSMPNFYYLFS
IPLLTSWLFFMLWFDLQNTKREYRPFFLSIAIFFMGYLGLGISIYPWIIPFQYTILDAAASGPSLSLMLIVIIPLLPIIL
TYTGYCYYVFRGKSNYEHTY
>Mature_340_residues
MFDFSSLINLPLIWGLLIAIAVLLYILMDGFDLGIGILLPFAPSDKCRDHMISSIAPFWDGNETWLVLGGGGLFAAFPLA
YSILMPAFYIPIIIMLLGLIVRGVSFEFRFKAEGKYRRLWDYAFHFGSLGAAFCQGMILGAFIHGVEVNGRNFSGGQFDW
ASAFSVMTGIAVIFGYALLGSTWLIMKTENITQEWARKVASYTLGFVGIFMGLVSVVTPFLNERIKNFWFSMPNFYYLFS
IPLLTSWLFFMLWFDLQNTKREYRPFFLSIAIFFMGYLGLGISIYPWIIPFQYTILDAAASGPSLSLMLIVIIPLLPIIL
TYTGYCYYVFRGKSNYEHTY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=365, Percent_Identity=28.7671232876712, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1787213, Length=378, Percent_Identity=29.1005291005291, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38591; Mature: 38591

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDFSSLINLPLIWGLLIAIAVLLYILMDGFDLGIGILLPFAPSDKCRDHMISSIAPFWD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCC
GNETWLVLGGGGLFAAFPLAYSILMPAFYIPIIIMLLGLIVRGVSFEFRFKAEGKYRRLW
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
DYAFHFGSLGAAFCQGMILGAFIHGVEVNGRNFSGGQFDWASAFSVMTGIAVIFGYALLG
HHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
STWLIMKTENITQEWARKVASYTLGFVGIFMGLVSVVTPFLNERIKNFWFSMPNFYYLFS
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IPLLTSWLFFMLWFDLQNTKREYRPFFLSIAIFFMGYLGLGISIYPWIIPFQYTILDAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
SGPSLSLMLIVIIPLLPIILTYTGYCYYVFRGKSNYEHTY
CCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MFDFSSLINLPLIWGLLIAIAVLLYILMDGFDLGIGILLPFAPSDKCRDHMISSIAPFWD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCC
GNETWLVLGGGGLFAAFPLAYSILMPAFYIPIIIMLLGLIVRGVSFEFRFKAEGKYRRLW
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
DYAFHFGSLGAAFCQGMILGAFIHGVEVNGRNFSGGQFDWASAFSVMTGIAVIFGYALLG
HHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
STWLIMKTENITQEWARKVASYTLGFVGIFMGLVSVVTPFLNERIKNFWFSMPNFYYLFS
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IPLLTSWLFFMLWFDLQNTKREYRPFFLSIAIFFMGYLGLGISIYPWIIPFQYTILDAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
SGPSLSLMLIVIIPLLPIILTYTGYCYYVFRGKSNYEHTY
CCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]