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The map label for this gene is xyn11A [H]

Identifier: 225630426

GI number: 225630426

Start: 713966

End: 714805

Strand: Reverse

Name: xyn11A [H]

Synonym: WRi_006610

Alternate gene names: 225630426

Gene position: 714805-713966 (Counterclockwise)

Preceding gene: 225630428

Following gene: 225630425

Centisome position: 49.44

GC content: 31.31

Gene sequence:

>840_bases
ATGTTTATAAGGATAATCACTTTTTTCTTACTATATTCAAGTACGGCTTTTTGTAGTGATTGTAATTTTAATTTACCATA
CTGTGGGCTCAGTTGTAATCTAGATCTATCATATAGAAATTTAAGTAATATAAAAAAATTATTGAATAACGACGATAAGT
TTGTTGCGCTTACGTTTGATGATGGACCTTCCAACAATAGAATAAACGATATTATTAATGTTCTGGAAAGCTATGAAGCA
AAAGCAACATTTTTTGTGCTTGGTGAACGTATAAATGAAAAAACGTCTGAAATAGTAAAGAAAATTCATGAATCAGGTCA
TGAGTTAGGCAATCACTCTTGGTCGCATAGGAAGTTGACATCACTTTCAAGTGAGGAACAATTGCAAGAATTGGAAAAGA
CAAATACAGCAATTAAAAATGCAATAAAACAAGATGTAAAATGGTTTCGTCCGCCATATGGATGTTATGACGATAATCTG
ATTGAAAATACTGATCAATTAAATATGTATTCAATATTATGGACAGTTGATTCGCTAGATTGGCAAGGTGATAAGCCAGA
AACTTTAGTTGAAAGAGTTTTAAGTAATGTACATAATGGAGCAGTTATACTGTTTCATGATCACAATAACAGGTCAAACA
CAATTGAAGCTTTACCTCATATTATTAAAATACTAAAAAAATCAGGTTATAAGTTTGTGACCTTAAGTGAGTGGGAAAAA
AGGGTTTGTAATACGGTAAAAGCCAGAAGTGTAACAATAAAAGAGGGGAAAAAAGTGCGTTTTGAAGGAATGTTATGTGG
ACAAAAAATAAAGTCTTTAACCGCAGAGCATTCATATTAG

Upstream 100 bases:

>100_bases
ATATAATATATTAAAGAAGCGATGAAGTAAAGGCTACAGCAATTAAAGATGGCTTAACTTAGCAAAAAAGTGTAGTATTC
TATCACTTTGCTGATTACAA

Downstream 100 bases:

>100_bases
GTGGTATTCAGCTTACCATTTCCGCGGTTTTTAGTTGCAGGTTATATAATTTACAAATACGAAACAGACAAAAGTACGAA
GCACTATCTAATAGTAATAG

Product: polysaccharide deacetylase, putative

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase 11A; Xylanase xyn11A; Xylanase xynT; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MFIRIITFFLLYSSTAFCSDCNFNLPYCGLSCNLDLSYRNLSNIKKLLNNDDKFVALTFDDGPSNNRINDIINVLESYEA
KATFFVLGERINEKTSEIVKKIHESGHELGNHSWSHRKLTSLSSEEQLQELEKTNTAIKNAIKQDVKWFRPPYGCYDDNL
IENTDQLNMYSILWTVDSLDWQGDKPETLVERVLSNVHNGAVILFHDHNNRSNTIEALPHIIKILKKSGYKFVTLSEWEK
RVCNTVKARSVTIKEGKKVRFEGMLCGQKIKSLTAEHSY

Sequences:

>Translated_279_residues
MFIRIITFFLLYSSTAFCSDCNFNLPYCGLSCNLDLSYRNLSNIKKLLNNDDKFVALTFDDGPSNNRINDIINVLESYEA
KATFFVLGERINEKTSEIVKKIHESGHELGNHSWSHRKLTSLSSEEQLQELEKTNTAIKNAIKQDVKWFRPPYGCYDDNL
IENTDQLNMYSILWTVDSLDWQGDKPETLVERVLSNVHNGAVILFHDHNNRSNTIEALPHIIKILKKSGYKFVTLSEWEK
RVCNTVKARSVTIKEGKKVRFEGMLCGQKIKSLTAEHSY
>Mature_279_residues
MFIRIITFFLLYSSTAFCSDCNFNLPYCGLSCNLDLSYRNLSNIKKLLNNDDKFVALTFDDGPSNNRINDIINVLESYEA
KATFFVLGERINEKTSEIVKKIHESGHELGNHSWSHRKLTSLSSEEQLQELEKTNTAIKNAIKQDVKWFRPPYGCYDDNL
IENTDQLNMYSILWTVDSLDWQGDKPETLVERVLSNVHNGAVILFHDHNNRSNTIEALPHIIKILKKSGYKFVTLSEWEK
RVCNTVKARSVTIKEGKKVRFEGMLCGQKIKSLTAEHSY

Specific function: Endo-acting xylanase which specifically cleaves internal linkages on the xylan backbone, releasing xylooligosaccharides. Is also probably able, via its C-terminal domain, to remove acetyl groups from acetylated xylan, and thus it is probably capable of hy

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=165, Percent_Identity=30.9090909090909, Blast_Score=86, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6323338, Length=126, Percent_Identity=38.0952380952381, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR008985
- InterPro:   IPR008979
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509 [H]

Pfam domain/function: PF03422 CBM_6; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 32122; Mature: 32122

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIRIITFFLLYSSTAFCSDCNFNLPYCGLSCNLDLSYRNLSNIKKLLNNDDKFVALTFD
CHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEECEEECHHHHHHHHHHHCCCCCEEEEEEC
DGPSNNRINDIINVLESYEAKATFFVLGERINEKTSEIVKKIHESGHELGNHSWSHRKLT
CCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
SLSSEEQLQELEKTNTAIKNAIKQDVKWFRPPYGCYDDNLIENTDQLNMYSILWTVDSLD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEEEEEEEECCC
WQGDKPETLVERVLSNVHNGAVILFHDHNNRSNTIEALPHIIKILKKSGYKFVTLSEWEK
CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHH
RVCNTVKARSVTIKEGKKVRFEGMLCGQKIKSLTAEHSY
HHHHHHHHCEEEECCCCEEEEHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFIRIITFFLLYSSTAFCSDCNFNLPYCGLSCNLDLSYRNLSNIKKLLNNDDKFVALTFD
CHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEECEEECHHHHHHHHHHHCCCCCEEEEEEC
DGPSNNRINDIINVLESYEAKATFFVLGERINEKTSEIVKKIHESGHELGNHSWSHRKLT
CCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
SLSSEEQLQELEKTNTAIKNAIKQDVKWFRPPYGCYDDNLIENTDQLNMYSILWTVDSLD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEEEEEEEECCC
WQGDKPETLVERVLSNVHNGAVILFHDHNNRSNTIEALPHIIKILKKSGYKFVTLSEWEK
CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHH
RVCNTVKARSVTIKEGKKVRFEGMLCGQKIKSLTAEHSY
HHHHHHHHCEEEECCCCEEEEHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA