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The map label for this gene is ssb [H]

Identifier: 225630389

GI number: 225630389

Start: 664557

End: 665039

Strand: Direct

Name: ssb [H]

Synonym: WRi_006180

Alternate gene names: 225630389

Gene position: 664557-665039 (Clockwise)

Preceding gene: 225630388

Following gene: 225630390

Centisome position: 45.96

GC content: 34.58

Gene sequence:

>483_bases
ATGTCTGGTGGTACCATAAACAAAGTCATACTAGTTGGTAATTTAGGAAAAGATCCTGAAATTAGGACTACACAAAATGG
AAAAGAAATGGCAAGTTTTTCAATAGCCACATCTGAAAGTTGGACTGATAAATTTTCTGGTACGCGCTCTGAAAAGACAG
AATGGCATAATATCGTAATTTTTAGTGAAGGATTAGTAAAAATCGTCAAAGATTTTGCACGCAAAGGCAGTAAAGTTTAT
GTTGAAGGTTCTTTGAGAACTAGAAAATGGACTGACCAAAACGGTGGTGAAAGATACACAACAGAGGTGGTTCTATATAA
TTTTAATAGCGCTCTTACTCTCTTGGATTCACGAAATAGTGCGCCAAATTCTGATTACAAGCCAAGTGAATACAAACAAG
GTGAAACAGAACAAAAAGATAAACACGAAAGTTTTGACAACGATATAAAAGATGAACTACTCGATGATGAAATACCATTT
TAA

Upstream 100 bases:

>100_bases
CAAAGGCCGTGGGTTCGAATCCCTCCAAGCGCACTTTTAATTAAATTTGACAATAGTATTTTCACATAAGATAATAAAAG
GATTTATTTAGAGCATAATT

Downstream 100 bases:

>100_bases
CAATTTAAATTGAAATCTACATTTTTATGGACTGCTTGTGTTACTCCTTTTAATTGCAATGGAGATAGCATAGATTATAG
CAGTTTGCAGCGTTTACTGA

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSGGTINKVILVGNLGKDPEIRTTQNGKEMASFSIATSESWTDKFSGTRSEKTEWHNIVIFSEGLVKIVKDFARKGSKVY
VEGSLRTRKWTDQNGGERYTTEVVLYNFNSALTLLDSRNSAPNSDYKPSEYKQGETEQKDKHESFDNDIKDELLDDEIPF

Sequences:

>Translated_160_residues
MSGGTINKVILVGNLGKDPEIRTTQNGKEMASFSIATSESWTDKFSGTRSEKTEWHNIVIFSEGLVKIVKDFARKGSKVY
VEGSLRTRKWTDQNGGERYTTEVVLYNFNSALTLLDSRNSAPNSDYKPSEYKQGETEQKDKHESFDNDIKDELLDDEIPF
>Mature_159_residues
SGGTINKVILVGNLGKDPEIRTTQNGKEMASFSIATSESWTDKFSGTRSEKTEWHNIVIFSEGLVKIVKDFARKGSKVYV
EGSLRTRKWTDQNGGERYTTEVVLYNFNSALTLLDSRNSAPNSDYKPSEYKQGETEQKDKHESFDNDIKDELLDDEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=109, Percent_Identity=33.0275229357798, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1790494, Length=121, Percent_Identity=52.0661157024793, Blast_Score=136, Evalue=7e-34,
Organism=Drosophila melanogaster, GI85725234, Length=100, Percent_Identity=30, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24647376, Length=100, Percent_Identity=30, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 18125; Mature: 17994

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGTINKVILVGNLGKDPEIRTTQNGKEMASFSIATSESWTDKFSGTRSEKTEWHNIVI
CCCCCEEEEEEEECCCCCCCCEECCCCCHHHEEEEECCCCCCHHHCCCCCCCCCEEEEEE
FSEGLVKIVKDFARKGSKVYVEGSLRTRKWTDQNGGERYTTEVVLYNFNSALTLLDSRNS
ECCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCC
APNSDYKPSEYKQGETEQKDKHESFDNDIKDELLDDEIPF
CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
SGGTINKVILVGNLGKDPEIRTTQNGKEMASFSIATSESWTDKFSGTRSEKTEWHNIVI
CCCCEEEEEEEECCCCCCCCEECCCCCHHHEEEEECCCCCCHHHCCCCCCCCCEEEEEE
FSEGLVKIVKDFARKGSKVYVEGSLRTRKWTDQNGGERYTTEVVLYNFNSALTLLDSRNS
ECCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCC
APNSDYKPSEYKQGETEQKDKHESFDNDIKDELLDDEIPF
CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]