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The map label for this gene is radC [C]

Identifier: 225630364

GI number: 225630364

Start: 631674

End: 632330

Strand: Reverse

Name: radC [C]

Synonym: WRi_005870

Alternate gene names: 225630364

Gene position: 632330-631674 (Counterclockwise)

Preceding gene: 225630365

Following gene: 225630363

Centisome position: 43.73

GC content: 35.92

Gene sequence:

>657_bases
ATGAATAAAAGTAAAGAAGAAATCGAATTCAGAATATTAGAAAGCAAAGGCAAAGCACTACTTGATCGTGAAATAATGGA
AACGTTTCTAAGTGCAGTACATGAAAGCCCACAGGCTCAAGAAATTGCTAAAAATTTGGTGAATACTTATACAGGAGTAG
GAAGGATTTTAGGTAGAGAAATGGATGACCTGAAAGTTATAGAAGGAGTAACTGATTCTGCAGTAGCAATGATTATGTGT
GTTAAGGAAACACTAGAAAGGGTACTGAAAGAAAAGCTTAAGAGTGAGCCAATCATGGACTTACAAGGGATAGTAGAGTA
CTTAAACGTAAGTATAGGCCACTCAGAAAGGGAATGTGTAAAAATACTGTACTTGAATAAAAGGCGTCAACTAATTGGAG
AAGAATCCTATATTGGTGAAATGGAAAAAGCACCAGTATACATAAAGGAAATTACAAGAAAGGCATTAATGAAAAATGCA
ACATCAATAATAATGTCACATAACCATCCTGGAGGGAGCTTAGAGCCATCAGAAGAAGATCAAGCAGTAACGAAGAGCTT
AGCAGCAGCATGTAGTACTGTAAGCGTAAAATTGTTTGACCATATTATCATCACAAGTGGAGGCTATTTCAGCTTTCGAG
AAAATGGATTGTTATAG

Upstream 100 bases:

>100_bases
TGATTTGACTTCACTCGAAAGCTATGGCTTTATGCCAATGCTGATAAAAAACAGCAGTAAATATCTAAAAAAAGTTTGTT
GTTAGTGAAAGGTAAATTAT

Downstream 100 bases:

>100_bases
TAGAAAGTATTTGCAAATCTACTCATTATAATTTATAATGAGTAGTAAGATGTATAAAGTTTATTGTACGCTTAAAAAGT
ATTTTTAATATGAGGTTTAT

Product: DNA repair protein RadC, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MNKSKEEIEFRILESKGKALLDREIMETFLSAVHESPQAQEIAKNLVNTYTGVGRILGREMDDLKVIEGVTDSAVAMIMC
VKETLERVLKEKLKSEPIMDLQGIVEYLNVSIGHSERECVKILYLNKRRQLIGEESYIGEMEKAPVYIKEITRKALMKNA
TSIIMSHNHPGGSLEPSEEDQAVTKSLAAACSTVSVKLFDHIIITSGGYFSFRENGLL

Sequences:

>Translated_218_residues
MNKSKEEIEFRILESKGKALLDREIMETFLSAVHESPQAQEIAKNLVNTYTGVGRILGREMDDLKVIEGVTDSAVAMIMC
VKETLERVLKEKLKSEPIMDLQGIVEYLNVSIGHSERECVKILYLNKRRQLIGEESYIGEMEKAPVYIKEITRKALMKNA
TSIIMSHNHPGGSLEPSEEDQAVTKSLAAACSTVSVKLFDHIIITSGGYFSFRENGLL
>Mature_218_residues
MNKSKEEIEFRILESKGKALLDREIMETFLSAVHESPQAQEIAKNLVNTYTGVGRILGREMDDLKVIEGVTDSAVAMIMC
VKETLERVLKEKLKSEPIMDLQGIVEYLNVSIGHSERECVKILYLNKRRQLIGEESYIGEMEKAPVYIKEITRKALMKNA
TSIIMSHNHPGGSLEPSEEDQAVTKSLAAACSTVSVKLFDHIIITSGGYFSFRENGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=202, Percent_Identity=26.2376237623762, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788312, Length=150, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788997, Length=118, Percent_Identity=35.5932203389831, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI2367100, Length=118, Percent_Identity=33.8983050847458, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24408; Mature: 24408

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSKEEIEFRILESKGKALLDREIMETFLSAVHESPQAQEIAKNLVNTYTGVGRILGRE
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
MDDLKVIEGVTDSAVAMIMCVKETLERVLKEKLKSEPIMDLQGIVEYLNVSIGHSERECV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
KILYLNKRRQLIGEESYIGEMEKAPVYIKEITRKALMKNATSIIMSHNHPGGSLEPSEED
HHHHHHHHHHHHCCHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHH
QAVTKSLAAACSTVSVKLFDHIIITSGGYFSFRENGLL
HHHHHHHHHHHHHHHHHHHHHHHEECCCEEECCCCCCC
>Mature Secondary Structure
MNKSKEEIEFRILESKGKALLDREIMETFLSAVHESPQAQEIAKNLVNTYTGVGRILGRE
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
MDDLKVIEGVTDSAVAMIMCVKETLERVLKEKLKSEPIMDLQGIVEYLNVSIGHSERECV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
KILYLNKRRQLIGEESYIGEMEKAPVYIKEITRKALMKNATSIIMSHNHPGGSLEPSEED
HHHHHHHHHHHHCCHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHH
QAVTKSLAAACSTVSVKLFDHIIITSGGYFSFRENGLL
HHHHHHHHHHHHHHHHHHHHHHHEECCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA