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The map label for this gene is atpD [H]

Identifier: 225630028

GI number: 225630028

Start: 195166

End: 196593

Strand: Direct

Name: atpD [H]

Synonym: WRi_001920

Alternate gene names: 225630028

Gene position: 195166-196593 (Clockwise)

Preceding gene: 225630027

Following gene: 225630029

Centisome position: 13.5

GC content: 37.46

Gene sequence:

>1428_bases
ATGAATATAGGTAGAGCGATTAAGGTAACTCAAGCAGTTGTTGATATAAAATTTGAAGGTGAATTGCCTAAAATATTTAA
TGCTTTAAAAAGCAAACTAAAATATAAGGATAAGGAGCTGGTTTTAGAAGTTTCGCAGCATATAGGTGACAATATAGTTC
GTTGTATTGCTATGGATAGCACAGATGGCATGTCAAGGGGGGATGAATTTGTTGATACAGGTGCACCAATATCGGTGCCA
ATTGGGCGTTCAACTTTAGGAAGGATTTTTAATGTTGTTGGAGAGCTTATAGATGAGTGTGGTCCACTGAAGGGAAAATA
TAACTTAGAGCCTATACACAGAGCACCTCCAAGTTTTACTGAACAGAGAATACAGGAAGAAGTTTTAGTTACGGGAATAA
AAGTTATAGATCTTCTTGCACCTTATCTTAAAGGAGGAAAAATTGGCTTATTTGGTGGAGCCGGTGTTGGTAAAACAGTC
CTAATAATGGAATTAATTAATAATATAGCAAAAGCTCATAAAGGATTTTCTGTGTTTGCCGGGGTAGGGGAGAGAACGCG
TGAAGGTAACGATCTTTATCACGAGATGATCACTTCAAATGTAATAAATATAAATGAGCATGAAAAATCTCAAGCTGTTT
TGGTTTATGGTCAGATGAATGAGCCTCCTGGAGCAAGGGCTAGAGTTGCTTTAACAGCACTTACTATGGCAGAGTATTTT
CGTGACCGTGAAAACCAAGATGTTCTATTTTTTGTGGATAATATCTTTAGATTTACACAAGCTGGTTCTGAAATTTCTGC
TTTACTTGGAAGAATACCGTCAGCTGTTGGTTATCAGCCAACCCTTGCAACTGATATGGGTGCAATGCAAGAAAGAATAG
CTTCAACAACTTCTGGCTCTATTACTTCTGTGCAAGCTATATATGTTCCTGCGGACGATTTAACTGATCCAGCTCCAGCA
ACTACGTTCTCTCACCTTGATGCCACCACAGTGTTGTCAAGGCAAATAGCTGAAATGGGAATATACCCTGCTGTTGATCC
ACTTGATTCAACTTCTCAGTCTTTATCTGCTGAAATCATTGGTGAAGAACATTATAAGGTAGCTTCTGAGGTGAAACGTA
TATTGCAAACTTATAAATCACTGCAAGATATTATCGCAATACTTGGTATGGATGAGCTATCTGATGAAGATAAAATTATT
GTTGATAGGGCTCGTAAGATTCAGAAATTTCTTTCTCAACCTTTTCACGTTGCAGAAATATTTACTGGCATGCCTGGTAA
ATTTGTTTCACTTTCTGATACTGTTTCCAGTTTTAAAGGGATTGTTGAAGGCAAATATGATCACTTACCAGAGGCCGCTT
TTTATATGGTGGGGAATATAGATGAAGCAATAAAAAAGGCTGAATTAATACAAGCTGAAGCTAAGTAA

Upstream 100 bases:

>100_bases
AAGCGTTTTAATGTTGCAAAATTTCTATTAATAATATAAAATTTATTTTCTTTAGAAGTTCTTTTATGGAATTATAGTGT
TAGGTGATAAAAATAAAGAG

Downstream 100 bases:

>100_bases
AAGTTAAAGATTATGAATACTTTTAAAGTGCAATTTTTCTCTCCTGATGATCAAATTTCATTCAGTGGAGTGGTTTCTCT
TTCAGTAACTGGGCTCGAAG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MNIGRAIKVTQAVVDIKFEGELPKIFNALKSKLKYKDKELVLEVSQHIGDNIVRCIAMDSTDGMSRGDEFVDTGAPISVP
IGRSTLGRIFNVVGELIDECGPLKGKYNLEPIHRAPPSFTEQRIQEEVLVTGIKVIDLLAPYLKGGKIGLFGGAGVGKTV
LIMELINNIAKAHKGFSVFAGVGERTREGNDLYHEMITSNVININEHEKSQAVLVYGQMNEPPGARARVALTALTMAEYF
RDRENQDVLFFVDNIFRFTQAGSEISALLGRIPSAVGYQPTLATDMGAMQERIASTTSGSITSVQAIYVPADDLTDPAPA
TTFSHLDATTVLSRQIAEMGIYPAVDPLDSTSQSLSAEIIGEEHYKVASEVKRILQTYKSLQDIIAILGMDELSDEDKII
VDRARKIQKFLSQPFHVAEIFTGMPGKFVSLSDTVSSFKGIVEGKYDHLPEAAFYMVGNIDEAIKKAELIQAEAK

Sequences:

>Translated_475_residues
MNIGRAIKVTQAVVDIKFEGELPKIFNALKSKLKYKDKELVLEVSQHIGDNIVRCIAMDSTDGMSRGDEFVDTGAPISVP
IGRSTLGRIFNVVGELIDECGPLKGKYNLEPIHRAPPSFTEQRIQEEVLVTGIKVIDLLAPYLKGGKIGLFGGAGVGKTV
LIMELINNIAKAHKGFSVFAGVGERTREGNDLYHEMITSNVININEHEKSQAVLVYGQMNEPPGARARVALTALTMAEYF
RDRENQDVLFFVDNIFRFTQAGSEISALLGRIPSAVGYQPTLATDMGAMQERIASTTSGSITSVQAIYVPADDLTDPAPA
TTFSHLDATTVLSRQIAEMGIYPAVDPLDSTSQSLSAEIIGEEHYKVASEVKRILQTYKSLQDIIAILGMDELSDEDKII
VDRARKIQKFLSQPFHVAEIFTGMPGKFVSLSDTVSSFKGIVEGKYDHLPEAAFYMVGNIDEAIKKAELIQAEAK
>Mature_475_residues
MNIGRAIKVTQAVVDIKFEGELPKIFNALKSKLKYKDKELVLEVSQHIGDNIVRCIAMDSTDGMSRGDEFVDTGAPISVP
IGRSTLGRIFNVVGELIDECGPLKGKYNLEPIHRAPPSFTEQRIQEEVLVTGIKVIDLLAPYLKGGKIGLFGGAGVGKTV
LIMELINNIAKAHKGFSVFAGVGERTREGNDLYHEMITSNVININEHEKSQAVLVYGQMNEPPGARARVALTALTMAEYF
RDRENQDVLFFVDNIFRFTQAGSEISALLGRIPSAVGYQPTLATDMGAMQERIASTTSGSITSVQAIYVPADDLTDPAPA
TTFSHLDATTVLSRQIAEMGIYPAVDPLDSTSQSLSAEIIGEEHYKVASEVKRILQTYKSLQDIIAILGMDELSDEDKII
VDRARKIQKFLSQPFHVAEIFTGMPGKFVSLSDTVSSFKGIVEGKYDHLPEAAFYMVGNIDEAIKKAELIQAEAK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=470, Percent_Identity=70.4255319148936, Blast_Score=680, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=318, Percent_Identity=27.9874213836478, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI19913426, Length=372, Percent_Identity=24.7311827956989, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI19913428, Length=372, Percent_Identity=25, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI50345984, Length=379, Percent_Identity=24.2744063324538, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI4757810, Length=379, Percent_Identity=24.2744063324538, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1790170, Length=469, Percent_Identity=64.3923240938166, Blast_Score=608, Evalue=1e-175,
Organism=Escherichia coli, GI1788251, Length=336, Percent_Identity=30.6547619047619, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1790172, Length=388, Percent_Identity=24.2268041237113, Blast_Score=89, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI25144756, Length=465, Percent_Identity=69.8924731182796, Blast_Score=671, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=361, Percent_Identity=27.9778393351801, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17570191, Length=391, Percent_Identity=24.5524296675192, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17510931, Length=355, Percent_Identity=25.0704225352113, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71988080, Length=379, Percent_Identity=23.7467018469657, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71988063, Length=379, Percent_Identity=23.7467018469657, Blast_Score=79, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=462, Percent_Identity=70.7792207792208, Blast_Score=675, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=360, Percent_Identity=26.6666666666667, Blast_Score=100, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6319370, Length=397, Percent_Identity=24.1813602015113, Blast_Score=85, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6320016, Length=253, Percent_Identity=26.4822134387352, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24638766, Length=471, Percent_Identity=69.0021231422505, Blast_Score=664, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=464, Percent_Identity=67.2413793103448, Blast_Score=636, Evalue=0.0,
Organism=Drosophila melanogaster, GI24583992, Length=318, Percent_Identity=27.3584905660377, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24583988, Length=345, Percent_Identity=26.0869565217391, Blast_Score=115, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24583986, Length=345, Percent_Identity=26.0869565217391, Blast_Score=115, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24583984, Length=345, Percent_Identity=26.0869565217391, Blast_Score=115, Evalue=8e-26,
Organism=Drosophila melanogaster, GI20129479, Length=318, Percent_Identity=27.0440251572327, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=51.0869565217391, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI281361666, Length=362, Percent_Identity=25.6906077348066, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24646341, Length=362, Percent_Identity=25.6906077348066, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI17136796, Length=362, Percent_Identity=25.6906077348066, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24658560, Length=384, Percent_Identity=24.21875, Blast_Score=82, Evalue=6e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51917; Mature: 51917

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGRAIKVTQAVVDIKFEGELPKIFNALKSKLKYKDKELVLEVSQHIGDNIVRCIAMDS
CCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHEEEEEECC
TDGMSRGDEFVDTGAPISVPIGRSTLGRIFNVVGELIDECGPLKGKYNLEPIHRAPPSFT
CCCCCCCCHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
EQRIQEEVLVTGIKVIDLLAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKAHKGFSVFA
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEE
GVGERTREGNDLYHEMITSNVININEHEKSQAVLVYGQMNEPPGARARVALTALTMAEYF
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
RDRENQDVLFFVDNIFRFTQAGSEISALLGRIPSAVGYQPTLATDMGAMQERIASTTSGS
HCCCCCCEEEEHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCCC
ITSVQAIYVPADDLTDPAPATTFSHLDATTVLSRQIAEMGIYPAVDPLDSTSQSLSAEII
CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
GEEHYKVASEVKRILQTYKSLQDIIAILGMDELSDEDKIIVDRARKIQKFLSQPFHVAEI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHH
FTGMPGKFVSLSDTVSSFKGIVEGKYDHLPEAAFYMVGNIDEAIKKAELIQAEAK
HCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHEECCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIGRAIKVTQAVVDIKFEGELPKIFNALKSKLKYKDKELVLEVSQHIGDNIVRCIAMDS
CCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHEEEEEECC
TDGMSRGDEFVDTGAPISVPIGRSTLGRIFNVVGELIDECGPLKGKYNLEPIHRAPPSFT
CCCCCCCCHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
EQRIQEEVLVTGIKVIDLLAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKAHKGFSVFA
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEE
GVGERTREGNDLYHEMITSNVININEHEKSQAVLVYGQMNEPPGARARVALTALTMAEYF
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
RDRENQDVLFFVDNIFRFTQAGSEISALLGRIPSAVGYQPTLATDMGAMQERIASTTSGS
HCCCCCCEEEEHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCCC
ITSVQAIYVPADDLTDPAPATTFSHLDATTVLSRQIAEMGIYPAVDPLDSTSQSLSAEII
CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
GEEHYKVASEVKRILQTYKSLQDIIAILGMDELSDEDKIIVDRARKIQKFLSQPFHVAEI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHH
FTGMPGKFVSLSDTVSSFKGIVEGKYDHLPEAAFYMVGNIDEAIKKAELIQAEAK
HCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHEECCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA