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The map label for this gene is secB

Identifier: 225629992

GI number: 225629992

Start: 145189

End: 145692

Strand: Direct

Name: secB

Synonym: WRi_001460

Alternate gene names: 225629992

Gene position: 145189-145692 (Clockwise)

Preceding gene: 225629987

Following gene: 225629993

Centisome position: 10.04

GC content: 33.53

Gene sequence:

>504_bases
ATGCCACAACAAAAAATGAGAATTCACGGTCAATATGTTAAAGATCTATCATTTGAGAATCCGAATTCGCCATTCCTTTC
CTCTAGTAAAGCTCCAGATATTAATGTAATGGTTAATATCAATTCAGCAAAATTAGAAGGGACGAAAAACAAAGAAGAAG
TGAATGAAGAAAAATCTTTTCATGAAATTACTTTGCATATAGAAGTCAAAGCAACGGTAAAAGATGAAGGCATAAAAGAT
GGTGTAGCTTTCATTTGTGAGACGAAATATTGTGGCATTTTTTCAATAGAAAATTTAAAAGAGTTGAGTGAGGAAGAGGT
AAGACAAGCTTTGTTTATTGGCGGACCTACTTTTCTTTTCCCTTTTGCAAGAGAAATAATTGCAAGAGTTACAAGTAGTG
GTGGATTTCCCCCACTGATGCTAGATCCTATAGATTTTGAAACTATGTATGAGCAGCAAGGTCAACAACAAAAAAGTAAC
GGTAGTAATTCCAATTTTAACTAA

Upstream 100 bases:

>100_bases
TTCATATCAACTTATAATCAGGTTTGCTATTCGTTTGTAAATGAATATATTATATAAGAAAGTATTAAATATCTCAACTT
AATTAAAGGAGACGTAAGAA

Downstream 100 bases:

>100_bases
TATAGTGTGATAGGATGAACAATTCTTTAAATGCAAAAACGACTTTAAACATTGACGGGAAGTCATACAACTATTTTAGC
CTAAGTAGTGCTAGTGAATT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MPQQKMRIHGQYVKDLSFENPNSPFLSSSKAPDINVMVNINSAKLEGTKNKEEVNEEKSFHEITLHIEVKATVKDEGIKD
GVAFICETKYCGIFSIENLKELSEEEVRQALFIGGPTFLFPFAREIIARVTSSGGFPPLMLDPIDFETMYEQQGQQQKSN
GSNSNFN

Sequences:

>Translated_167_residues
MPQQKMRIHGQYVKDLSFENPNSPFLSSSKAPDINVMVNINSAKLEGTKNKEEVNEEKSFHEITLHIEVKATVKDEGIKD
GVAFICETKYCGIFSIENLKELSEEEVRQALFIGGPTFLFPFAREIIARVTSSGGFPPLMLDPIDFETMYEQQGQQQKSN
GSNSNFN
>Mature_166_residues
PQQKMRIHGQYVKDLSFENPNSPFLSSSKAPDINVMVNINSAKLEGTKNKEEVNEEKSFHEITLHIEVKATVKDEGIKDG
VAFICETKYCGIFSIENLKELSEEEVRQALFIGGPTFLFPFAREIIARVTSSGGFPPLMLDPIDFETMYEQQGQQQKSNG
SNSNFN

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=159, Percent_Identity=31.4465408805031, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_WOLPM (Q73IQ0)

Other databases:

- EMBL:   AE017196
- RefSeq:   NP_965927.1
- ProteinModelPortal:   Q73IQ0
- SMR:   Q73IQ0
- EnsemblBacteria:   EBWOLT00000004101
- GeneID:   2738661
- GenomeReviews:   AE017196_GR
- KEGG:   wol:WD0106
- TIGR:   WD_0106
- GeneTree:   EBGT00050000031332
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q73IQ0
- ProtClustDB:   PRK05751
- BioCyc:   WPIP955:WD_0106-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18796; Mature: 18665

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQQKMRIHGQYVKDLSFENPNSPFLSSSKAPDINVMVNINSAKLEGTKNKEEVNEEKSF
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCCHHHHHHCCCE
HEITLHIEVKATVKDEGIKDGVAFICETKYCGIFSIENLKELSEEEVRQALFIGGPTFLF
EEEEEEEEEEEEECCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHH
PFAREIIARVTSSGGFPPLMLDPIDFETMYEQQGQQQKSNGSNSNFN
HHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PQQKMRIHGQYVKDLSFENPNSPFLSSSKAPDINVMVNINSAKLEGTKNKEEVNEEKSF
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCCHHHHHHCCCE
HEITLHIEVKATVKDEGIKDGVAFICETKYCGIFSIENLKELSEEEVRQALFIGGPTFLF
EEEEEEEEEEEEECCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHH
PFAREIIARVTSSGGFPPLMLDPIDFETMYEQQGQQQKSNGSNSNFN
HHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA