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The map label for this gene is 225629989

Identifier: 225629989

GI number: 225629989

Start: 143001

End: 143609

Strand: Reverse

Name: 225629989

Synonym: WRi_001430

Alternate gene names: NA

Gene position: 143609-143001 (Counterclockwise)

Preceding gene: 225629990

Following gene: 225629988

Centisome position: 9.93

GC content: 35.14

Gene sequence:

>609_bases
ATGGTAAGGTTTATAAGATTGTTATCTAATGTGCTAGCAGCATTAGCAGTTGTTTTTTTAGGTTATTGTTATTTCACTAA
AAAAGGCATATTTGCCCCAGCAGCGATTCACAACGCAGAAGTTAAGATAGGCGGAGATTTTTCTTTAATTAATCAGGACG
GACAGATCCTGCGCAGTAGTGATTTTAAAGATAAATACATGATGATTTTCTTTGGGTTTTCCTCATGCAAAAGAATTTGC
CCTATGAACCTTGGGATAATTTCAGAAACACTTGCAAGGTTAGATGAGAAAACTAACAACAAGCTACAAACATTTTTTAT
CACAGTTGATCCTGAGCGCGATAGCACGGAAAGACTTAAAGAATTTCAGCAGCAATTTGACCACAGAATACAAATGTTAA
CTGGTGAAAGAGAAAAAATAGACGAAGTAGTTGCAAAATATAAAGTATATGCAAGCAAAGTAGACGGAGAAGAAGAAATC
AACCATTCTTCGATAATATATCTTATTGGCCCTGGAGGAAGATATGTTACACACTTTGCAGCTGATTTAAATTCAGACGA
AAGTCAATCTGATAAGATTTTGGCTGAGATCAGAAAATACGTAAACTGA

Upstream 100 bases:

>100_bases
ATAAGAAACTGTTAGACAAAATTAACAATACACTTTGGAATAAATATATTGAATAGGTCAACTAATAAAGATACAATTTA
ATTTTACTGAGAGCACCCTA

Downstream 100 bases:

>100_bases
ATTATAGATTTTTCTGTTAATTAGCCGAGCACGCAACTGCATGAGCATTATAATTTAATCTCCACCTGGAAGACACATTG
GAATGACACTATTTGCTGTC

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MVRFIRLLSNVLAALAVVFLGYCYFTKKGIFAPAAIHNAEVKIGGDFSLINQDGQILRSSDFKDKYMMIFFGFSSCKRIC
PMNLGIISETLARLDEKTNNKLQTFFITVDPERDSTERLKEFQQQFDHRIQMLTGEREKIDEVVAKYKVYASKVDGEEEI
NHSSIIYLIGPGGRYVTHFAADLNSDESQSDKILAEIRKYVN

Sequences:

>Translated_202_residues
MVRFIRLLSNVLAALAVVFLGYCYFTKKGIFAPAAIHNAEVKIGGDFSLINQDGQILRSSDFKDKYMMIFFGFSSCKRIC
PMNLGIISETLARLDEKTNNKLQTFFITVDPERDSTERLKEFQQQFDHRIQMLTGEREKIDEVVAKYKVYASKVDGEEEI
NHSSIIYLIGPGGRYVTHFAADLNSDESQSDKILAEIRKYVN
>Mature_202_residues
MVRFIRLLSNVLAALAVVFLGYCYFTKKGIFAPAAIHNAEVKIGGDFSLINQDGQILRSSDFKDKYMMIFFGFSSCKRIC
PMNLGIISETLARLDEKTNNKLQTFFITVDPERDSTERLKEFQQQFDHRIQMLTGEREKIDEVVAKYKVYASKVDGEEEI
NHSSIIYLIGPGGRYVTHFAADLNSDESQSDKILAEIRKYVN

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=169, Percent_Identity=31.3609467455621, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI281182727, Length=154, Percent_Identity=31.8181818181818, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI281182722, Length=154, Percent_Identity=31.8181818181818, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI281182716, Length=154, Percent_Identity=31.8181818181818, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI153791313, Length=154, Percent_Identity=31.8181818181818, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17531419, Length=156, Percent_Identity=28.8461538461538, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6319498, Length=214, Percent_Identity=31.7757009345794, Blast_Score=105, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6319511, Length=165, Percent_Identity=35.7575757575758, Blast_Score=92, Evalue=5e-20,
Organism=Drosophila melanogaster, GI19920710, Length=167, Percent_Identity=31.7365269461078, Blast_Score=105, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23070; Mature: 23070

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRFIRLLSNVLAALAVVFLGYCYFTKKGIFAPAAIHNAEVKIGGDFSLINQDGQILRSS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEEECCCEEEECCCCCEEECC
DFKDKYMMIFFGFSSCKRICPMNLGIISETLARLDEKTNNKLQTFFITVDPERDSTERLK
CCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH
EFQQQFDHRIQMLTGEREKIDEVVAKYKVYASKVDGEEEINHSSIIYLIGPGGRYVTHFA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEECCCCCEEHHHH
ADLNSDESQSDKILAEIRKYVN
HHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MVRFIRLLSNVLAALAVVFLGYCYFTKKGIFAPAAIHNAEVKIGGDFSLINQDGQILRSS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEEECCCEEEECCCCCEEECC
DFKDKYMMIFFGFSSCKRICPMNLGIISETLARLDEKTNNKLQTFFITVDPERDSTERLK
CCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH
EFQQQFDHRIQMLTGEREKIDEVVAKYKVYASKVDGEEEINHSSIIYLIGPGGRYVTHFA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEECCCCCEEHHHH
ADLNSDESQSDKILAEIRKYVN
HHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]