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The map label for this gene is bepC [H]

Identifier: 225629922

GI number: 225629922

Start: 62867

End: 64090

Strand: Direct

Name: bepC [H]

Synonym: WRi_000590

Alternate gene names: 225629922

Gene position: 62867-64090 (Clockwise)

Preceding gene: 225629918

Following gene: 225629923

Centisome position: 4.35

GC content: 34.23

Gene sequence:

>1224_bases
ATGTTTCGATTGATTATCACACTTGCGATCATTTTTAATACTATAAGTTGCTATGCAACCGATGTGGGAGAAGTGATAAG
CAAAGCCATCAAAAATAGCTCAAAAATAAAGTCTCAATTTTACCAATATAAAAGCGCAGAAAAACACTATAAATCTTCTG
GGTTAGCTGGATTTTTACCTGACATTAATTTGCAATACAATTTCGATAGTAACTTTAATCTTGATACATCTGAAAAAAAA
CTTACATTGCGCCAGAAATTAATCGATGGCGGTGGTACCTTTGCCACATTCAGTCGATCAAGCCATCTTCTCAAAGCAGA
AAAGATGCGATTTCAGCAATTAAAACAAGAGCTTGCACTTAATGCTGTGAAAGCATATGTTAATGTTTTACAAAAGACAG
AAATATTAAAGCTCAGAGAACATAAAGAACGCGTTTCTTTGGAACATTTGTCAGCTATGAAAAAACGCTTTTCCCTTGGA
GAGGTAACCAATGCTGAAGTTTTGTTAGCAAAAGCAAAATTTTCGTCTTCTATATCCGAAAGAGTTGATGCTGAAGGTAA
ATTAAAGTTGGTAAATATTGCTTATTATCATTTGATTGGCGAAGATGCTGATGACCTTTCTGAAGCTAATGATAAACTAC
CTTCTGTTCCAGAGCTAAATGAATGTTTACAGTTAGCAAAAACCAATAATTTATCTTTAAAAGCAGCAGTTTATCAAAAA
AGAGCAGCCGGAATGGAAGTGATCGCTGAAAGCTCCAAGTGGCTTCCTTCTTTAAATCTAAGTGCAAGCAAAAATTTTGG
GGAGGATGGTATGAAGGTAGACAAACTATTAGAAAATGTTCATGTAGTTTTTACTCTTGATGTTCCAATCTTTAAGAGAG
GAGTTAATGCTTTTGGTGTCAGTAAAGCTAAAATGGATGCAAAAAAATCTACCTACGATTATTATGAAACGGTAAAAAAT
ATAGAACAAGCAGTTGTAAATGCTTGGAATAATGTGTTGACAGCAAAGGCCATTATCAAAGCAAGTCAAGAAGCGGAAAA
AGCAGCAGCTCTAGCATTGGAAGGAGTTGAGCAAGAAGTAAACTTAAATTTAAAGAGTACATCTGACCTTTTGGACACTG
AAGATGCATTATTTAAAGCACGTTCAGACTTAGTTGAAGCAAAAAGCAATTATGTGATTAGTGTTTACAACTTGCTTTTT
ATGATAAATAGTATAGACCTCTAA

Upstream 100 bases:

>100_bases
ATACTTAATTTCTCAATAGTGTCAACAATATTAGTTATTGATTATTAAAGTAATTTATGTTAGTAATTGAGCTGCGCAAC
CAATATGCATAGGAATTAGA

Downstream 100 bases:

>100_bases
ATTTAATGGTATTAGCACTATGCATGATGAACAAGGCAATCAATCTGTAAAAGATATCCTAGAAGATATAAAAAAAGCTA
TATCGGGTAAAAACGCGAGT

Product: outer membrane protein TolC, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MFRLIITLAIIFNTISCYATDVGEVISKAIKNSSKIKSQFYQYKSAEKHYKSSGLAGFLPDINLQYNFDSNFNLDTSEKK
LTLRQKLIDGGGTFATFSRSSHLLKAEKMRFQQLKQELALNAVKAYVNVLQKTEILKLREHKERVSLEHLSAMKKRFSLG
EVTNAEVLLAKAKFSSSISERVDAEGKLKLVNIAYYHLIGEDADDLSEANDKLPSVPELNECLQLAKTNNLSLKAAVYQK
RAAGMEVIAESSKWLPSLNLSASKNFGEDGMKVDKLLENVHVVFTLDVPIFKRGVNAFGVSKAKMDAKKSTYDYYETVKN
IEQAVVNAWNNVLTAKAIIKASQEAEKAAALALEGVEQEVNLNLKSTSDLLDTEDALFKARSDLVEAKSNYVISVYNLLF
MINSIDL

Sequences:

>Translated_407_residues
MFRLIITLAIIFNTISCYATDVGEVISKAIKNSSKIKSQFYQYKSAEKHYKSSGLAGFLPDINLQYNFDSNFNLDTSEKK
LTLRQKLIDGGGTFATFSRSSHLLKAEKMRFQQLKQELALNAVKAYVNVLQKTEILKLREHKERVSLEHLSAMKKRFSLG
EVTNAEVLLAKAKFSSSISERVDAEGKLKLVNIAYYHLIGEDADDLSEANDKLPSVPELNECLQLAKTNNLSLKAAVYQK
RAAGMEVIAESSKWLPSLNLSASKNFGEDGMKVDKLLENVHVVFTLDVPIFKRGVNAFGVSKAKMDAKKSTYDYYETVKN
IEQAVVNAWNNVLTAKAIIKASQEAEKAAALALEGVEQEVNLNLKSTSDLLDTEDALFKARSDLVEAKSNYVISVYNLLF
MINSIDL
>Mature_407_residues
MFRLIITLAIIFNTISCYATDVGEVISKAIKNSSKIKSQFYQYKSAEKHYKSSGLAGFLPDINLQYNFDSNFNLDTSEKK
LTLRQKLIDGGGTFATFSRSSHLLKAEKMRFQQLKQELALNAVKAYVNVLQKTEILKLREHKERVSLEHLSAMKKRFSLG
EVTNAEVLLAKAKFSSSISERVDAEGKLKLVNIAYYHLIGEDADDLSEANDKLPSVPELNECLQLAKTNNLSLKAAVYQK
RAAGMEVIAESSKWLPSLNLSASKNFGEDGMKVDKLLENVHVVFTLDVPIFKRGVNAFGVSKAKMDAKKSTYDYYETVKN
IEQAVVNAWNNVLTAKAIIKASQEAEKAAALALEGVEQEVNLNLKSTSDLLDTEDALFKARSDLVEAKSNYVISVYNLLF
MINSIDL

Specific function: Involved in the efflux of toxic and relatively hydrophobic compounds. Influences survival inside the host [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=324, Percent_Identity=24.0740740740741, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 45394; Mature: 45394

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRLIITLAIIFNTISCYATDVGEVISKAIKNSSKIKSQFYQYKSAEKHYKSSGLAGFLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEECCC
DINLQYNFDSNFNLDTSEKKLTLRQKLIDGGGTFATFSRSSHLLKAEKMRFQQLKQELAL
CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
NAVKAYVNVLQKTEILKLREHKERVSLEHLSAMKKRFSLGEVTNAEVLLAKAKFSSSISE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHH
RVDAEGKLKLVNIAYYHLIGEDADDLSEANDKLPSVPELNECLQLAKTNNLSLKAAVYQK
HCCCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEHHHHHHH
RAAGMEVIAESSKWLPSLNLSASKNFGEDGMKVDKLLENVHVVFTLDVPIFKRGVNAFGV
HHCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCHHHHCCCCCCCC
SKAKMDAKKSTYDYYETVKNIEQAVVNAWNNVLTAKAIIKASQEAEKAAALALEGVEQEV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
NLNLKSTSDLLDTEDALFKARSDLVEAKSNYVISVYNLLFMINSIDL
CCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCC
>Mature Secondary Structure
MFRLIITLAIIFNTISCYATDVGEVISKAIKNSSKIKSQFYQYKSAEKHYKSSGLAGFLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEECCC
DINLQYNFDSNFNLDTSEKKLTLRQKLIDGGGTFATFSRSSHLLKAEKMRFQQLKQELAL
CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
NAVKAYVNVLQKTEILKLREHKERVSLEHLSAMKKRFSLGEVTNAEVLLAKAKFSSSISE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHH
RVDAEGKLKLVNIAYYHLIGEDADDLSEANDKLPSVPELNECLQLAKTNNLSLKAAVYQK
HCCCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEHHHHHHH
RAAGMEVIAESSKWLPSLNLSASKNFGEDGMKVDKLLENVHVVFTLDVPIFKRGVNAFGV
HHCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCHHHHCCCCCCCC
SKAKMDAKKSTYDYYETVKNIEQAVVNAWNNVLTAKAIIKASQEAEKAAALALEGVEQEV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
NLNLKSTSDLLDTEDALFKARSDLVEAKSNYVISVYNLLFMINSIDL
CCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]