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The map label for this gene is virD4 [H]

Identifier: 225629880

GI number: 225629880

Start: 8305

End: 10323

Strand: Direct

Name: virD4 [H]

Synonym: WRi_000090

Alternate gene names: 225629880

Gene position: 8305-10323 (Clockwise)

Preceding gene: 225629879

Following gene: 225629881

Centisome position: 0.57

GC content: 36.5

Gene sequence:

>2019_bases
ATGAGTAATGGAAATCACCTACGTAATATTCTCATAGGAGGTGTAGTAGCTTTTAGCGTACTTGAGTTTTGCTTCTATCT
ATCTGGTATATTGTTTGTTCTGTTTGCTGATGGTCCGGATGCTGTGGATTTTAAGGCAATTAATCCTAGTTTGACGCCTT
TCCCTCAAGCTCTTTGGCCAACGATTTTTGATCATATACAATATTGTTGGCATCATCCAGAGTTATATAGCCTTGAGCTC
AAAATCACATTAATTATATCTTCTGCACTGCCTATCATTGTTTTAATGATTATCTTATGGAATTTAAGAGAAAGGATAAT
TGAGTGGCGACCATTTAAAAAGAAGGAATCACTTCATGGAGATTCGCAGTGGGCATCAGAGAAAGACATACGAAAAGCAG
GATTAAGAAGCAAAAAGGGATTATTGCTTGGTAAAGATAAAAGAGGATACTTCATTTCTGATGGGTTTCAGCATGCATTG
TTATTTGCACCTACAGGTTCTGGTAAGGGTGTTGGCTTTGTAATTCCTAATTTATTATTTTGGACTGACTCGGTAATTGT
ACACGACATAAAATTAGAAAACTATGAAATAACAAGTGGTTGGCGAGAACGACAAGGACAAAAAGTATACGTATGGAATC
CAGCGCAGCCAGATGGAATAAGTCACTGTTACAATCCATTACAATGGATTAGTGAAAAACCTGGACAGATGGTTGACGAT
GTGCAGAAAATAGCCAACCTAATTATGCCTGAACAAGACTTTTGGCAAAATGAAGCAAGAAGTTTATTTGTTGGAGTGGT
ATTATACTTACTTGCTGCACCAGAGAAAGTCAAATCTTTTGGTGAAGTTGTGCGTACGATGCGTAGTGATGATGTAGTCT
ATAATCTTGCTGTTGCTCTTGATACAATGGGTAAAATACTACACCCTGTAGCATATATGAACATTGCAGCTTTTTTACAA
AAAGCTGATAAAGAAAGGTCGGGTGTTGTATCAACCATGAACTCATCACTTGAATTGTGGGCAAACCCATTGATTGATAC
TGCAACTGCGTCAAGTGATTTTAATATTTTAGATTTTAAAAAGAAGAAAACTACAGTTTATGTTGGTTTAACTCCTGACA
ACTTGACTAGGCTCAGGCCTTTAATGCAGGTTTTTTACCAACAGGCAACTGAGTTTTTATGTAGAAAATTGCCATCAGAT
GACGAGCCTTATGGCGTATTGTTTTTAATGGATGAGTTTCCTACACTTGGAAAAATGGAGCAATTTCAAACAGGTATTGC
ATATTTTCGTGGTTATCGAGTTAGGTTATTCTTAATTGTTCAAGATACTGAGCAGCTCAAAGGAATATACGAAGAAGCAG
GGATGAACTCCTTTTTGTCAAACTCGACTTACAGAATAACTTTTGCAGCCAATAATATTGAAACAGCTAATTTAATATCG
CAACTTATAGGAAATAAAACTGTACAACAAGAATCGTTAAACAAACCTAAGTTTTTAGACTTGAATCCTGCTTCAAGGTC
GTTACATATCTCTGAAATACAGAGAGCATTGCTATTGCCTCAAGAAGTTATTATGTTGCCACGCGACGATCAGATAATTT
TAATAGAGTCGACTTACCCAATTAAATCAAAGAAAATTTTGTACTATAGTGATAGCACCTTCACAAAAAGACTGCTCAAG
CAAACTCGTGTGCCTACACAAGAACCATATGACCCAAACAAAGTTCTTTCTGCCGCTGCGAGCAAAGATAAGGTTAATAA
TGAGGGGAATAATGCTCTTGAGGGACCTAATTCAGTTGATTATCCTGCTGAAACTAAAACAGAAGATGCAGTATATGATG
AATCAAATGAATTTGCAGACGAAGATATTGATGATGAAGATATCGACGATAAGTTTGAAGATGATGATGACGGGTTTGAT
GATGAGGAAAAGAGCGATGATGGGTTTGATGACGAAGAAGAGGAGGATGAATTTGAAGATGAGGATATTGATGATAAATT
CAAAAATGACGAGAAGTAA

Upstream 100 bases:

>100_bases
AAGAACCGGTGGGGGCAAAAGAAGCATTTCTGAGATATTATTTACTAGATCTGCGAGCGAAAATGCTTAAATTTATACAT
AAGTTAAGGAAGAGTAGTTT

Downstream 100 bases:

>100_bases
GGTTAACTTCGCCTATTTTTTAGCTTAGGAAAGTGCAAGTTATGCAAATAATTAGGTTTTTCATATTAAGCCATTTTTAA
TTAATTAGTATTAGATTAGC

Product: type IV secretion system component VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 672; Mature: 671

Protein sequence:

>672_residues
MSNGNHLRNILIGGVVAFSVLEFCFYLSGILFVLFADGPDAVDFKAINPSLTPFPQALWPTIFDHIQYCWHHPELYSLEL
KITLIISSALPIIVLMIILWNLRERIIEWRPFKKKESLHGDSQWASEKDIRKAGLRSKKGLLLGKDKRGYFISDGFQHAL
LFAPTGSGKGVGFVIPNLLFWTDSVIVHDIKLENYEITSGWRERQGQKVYVWNPAQPDGISHCYNPLQWISEKPGQMVDD
VQKIANLIMPEQDFWQNEARSLFVGVVLYLLAAPEKVKSFGEVVRTMRSDDVVYNLAVALDTMGKILHPVAYMNIAAFLQ
KADKERSGVVSTMNSSLELWANPLIDTATASSDFNILDFKKKKTTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRKLPSD
DEPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIVQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
QLIGNKTVQQESLNKPKFLDLNPASRSLHISEIQRALLLPQEVIMLPRDDQIILIESTYPIKSKKILYYSDSTFTKRLLK
QTRVPTQEPYDPNKVLSAAASKDKVNNEGNNALEGPNSVDYPAETKTEDAVYDESNEFADEDIDDEDIDDKFEDDDDGFD
DEEKSDDGFDDEEEEDEFEDEDIDDKFKNDEK

Sequences:

>Translated_672_residues
MSNGNHLRNILIGGVVAFSVLEFCFYLSGILFVLFADGPDAVDFKAINPSLTPFPQALWPTIFDHIQYCWHHPELYSLEL
KITLIISSALPIIVLMIILWNLRERIIEWRPFKKKESLHGDSQWASEKDIRKAGLRSKKGLLLGKDKRGYFISDGFQHAL
LFAPTGSGKGVGFVIPNLLFWTDSVIVHDIKLENYEITSGWRERQGQKVYVWNPAQPDGISHCYNPLQWISEKPGQMVDD
VQKIANLIMPEQDFWQNEARSLFVGVVLYLLAAPEKVKSFGEVVRTMRSDDVVYNLAVALDTMGKILHPVAYMNIAAFLQ
KADKERSGVVSTMNSSLELWANPLIDTATASSDFNILDFKKKKTTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRKLPSD
DEPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIVQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
QLIGNKTVQQESLNKPKFLDLNPASRSLHISEIQRALLLPQEVIMLPRDDQIILIESTYPIKSKKILYYSDSTFTKRLLK
QTRVPTQEPYDPNKVLSAAASKDKVNNEGNNALEGPNSVDYPAETKTEDAVYDESNEFADEDIDDEDIDDKFEDDDDGFD
DEEKSDDGFDDEEEEDEFEDEDIDDKFKNDEK
>Mature_671_residues
SNGNHLRNILIGGVVAFSVLEFCFYLSGILFVLFADGPDAVDFKAINPSLTPFPQALWPTIFDHIQYCWHHPELYSLELK
ITLIISSALPIIVLMIILWNLRERIIEWRPFKKKESLHGDSQWASEKDIRKAGLRSKKGLLLGKDKRGYFISDGFQHALL
FAPTGSGKGVGFVIPNLLFWTDSVIVHDIKLENYEITSGWRERQGQKVYVWNPAQPDGISHCYNPLQWISEKPGQMVDDV
QKIANLIMPEQDFWQNEARSLFVGVVLYLLAAPEKVKSFGEVVRTMRSDDVVYNLAVALDTMGKILHPVAYMNIAAFLQK
ADKERSGVVSTMNSSLELWANPLIDTATASSDFNILDFKKKKTTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRKLPSDD
EPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIVQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLISQ
LIGNKTVQQESLNKPKFLDLNPASRSLHISEIQRALLLPQEVIMLPRDDQIILIESTYPIKSKKILYYSDSTFTKRLLKQ
TRVPTQEPYDPNKVLSAAASKDKVNNEGNNALEGPNSVDYPAETKTEDAVYDESNEFADEDIDDEDIDDKFEDDDDGFDD
EEKSDDGFDDEEEEDEFEDEDIDDKFKNDEK

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 76613; Mature: 76482

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNGNHLRNILIGGVVAFSVLEFCFYLSGILFVLFADGPDAVDFKAINPSLTPFPQALWP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEECCCCCCCCCHHHHH
TIFDHIQYCWHHPELYSLELKITLIISSALPIIVLMIILWNLRERIIEWRPFKKKESLHG
HHHHHHHHHHCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC
DSQWASEKDIRKAGLRSKKGLLLGKDKRGYFISDGFQHALLFAPTGSGKGVGFVIPNLLF
CCHHCCHHHHHHHCCCCCCCCEEECCCCCEEECCCCCEEEEEEECCCCCCCHHHHHHHHH
WTDSVIVHDIKLENYEITSGWRERQGQKVYVWNPAQPDGISHCYNPLQWISEKPGQMVDD
HCCCEEEEEEEECCEEECCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHH
VQKIANLIMPEQDFWQNEARSLFVGVVLYLLAAPEKVKSFGEVVRTMRSDDVVYNLAVAL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
DTMGKILHPVAYMNIAAFLQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNILDFK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCHHCCCCCCCCCEEEEE
KKKTTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRKLPSDDEPYGVLFLMDEFPTLGKME
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHH
QFQTGIAYFRGYRVRLFLIVQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
HHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHCCHHHHCCCEEEEEEEECCCCHHHHHH
QLIGNKTVQQESLNKPKFLDLNPASRSLHISEIQRALLLPQEVIMLPRDDQIILIESTYP
HHHCCCHHHHHHCCCCCEEECCCCCCCEEHHHHHHHHHCCHHHEECCCCCCEEEEECCCC
IKSKKILYYSDSTFTKRLLKQTRVPTQEPYDPNKVLSAAASKDKVNNEGNNALEGPNSVD
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
YPAETKTEDAVYDESNEFADEDIDDEDIDDKFEDDDDGFDDEEKSDDGFDDEEEEDEFED
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
EDIDDKFKNDEK
CCCCHHHCCCCC
>Mature Secondary Structure 
SNGNHLRNILIGGVVAFSVLEFCFYLSGILFVLFADGPDAVDFKAINPSLTPFPQALWP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEECCCCCCCCCHHHHH
TIFDHIQYCWHHPELYSLELKITLIISSALPIIVLMIILWNLRERIIEWRPFKKKESLHG
HHHHHHHHHHCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC
DSQWASEKDIRKAGLRSKKGLLLGKDKRGYFISDGFQHALLFAPTGSGKGVGFVIPNLLF
CCHHCCHHHHHHHCCCCCCCCEEECCCCCEEECCCCCEEEEEEECCCCCCCHHHHHHHHH
WTDSVIVHDIKLENYEITSGWRERQGQKVYVWNPAQPDGISHCYNPLQWISEKPGQMVDD
HCCCEEEEEEEECCEEECCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHH
VQKIANLIMPEQDFWQNEARSLFVGVVLYLLAAPEKVKSFGEVVRTMRSDDVVYNLAVAL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
DTMGKILHPVAYMNIAAFLQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNILDFK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCHHCCCCCCCCCEEEEE
KKKTTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRKLPSDDEPYGVLFLMDEFPTLGKME
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHH
QFQTGIAYFRGYRVRLFLIVQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
HHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHCCHHHHCCCEEEEEEEECCCCHHHHHH
QLIGNKTVQQESLNKPKFLDLNPASRSLHISEIQRALLLPQEVIMLPRDDQIILIESTYP
HHHCCCHHHHHHCCCCCEEECCCCCCCEEHHHHHHHHHCCHHHEECCCCCCEEEEECCCC
IKSKKILYYSDSTFTKRLLKQTRVPTQEPYDPNKVLSAAASKDKVNNEGNNALEGPNSVD
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
YPAETKTEDAVYDESNEFADEDIDDEDIDDKFEDDDDGFDDEEKSDDGFDDEEEEDEFED
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
EDIDDKFKNDEK
CCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2194232; 11743193; 11743194 [H]