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The map label for this gene is gcdB [H]

Identifier: 222526916

GI number: 222526916

Start: 4606942

End: 4608063

Strand: Reverse

Name: gcdB [H]

Synonym: Chy400_3694

Alternate gene names: 222526916

Gene position: 4608063-4606942 (Counterclockwise)

Preceding gene: 222526917

Following gene: 222526911

Centisome position: 87.46

GC content: 57.93

Gene sequence:

>1122_bases
ATGAGTGAATTGATCGCCAGCATCTTCGCCGGCATTGGTGCGCTTTCCTGGCAATCTCTGGTGATGATAGGGATTGCCGC
CCTGCTCTTCTATCTGGCGATAGTGCATCAGTATGAACCGCTTCTACTCCTGCCGATTGGTGCCGGTGCGCTCCTGGCCA
ATCTCCCACTCTCGCCGTTAGCAGGTGAGGATGGCTTGCTGACTATTCTCTACAATGCCGGTGTTGGTAATGAACTCTTC
CCCCTCTTGATCTTTATCGGCATAGGTGCGCTAACCGACTTTAGCCCACTCCTTTCCAACCCACGCATGGTGTTAACAGG
GGCTGCCGGGCAGTTTGGCATCTTCGGCACGCTCTTGCTCGCGCTGGCACTGGGATTTAGTCGTGAAGAGTCCGCCTCGA
TTGGGATTATCGGCGCCATCGACGGGCCAACCTCAATTTACGTCTCCAGCCTGCTGGCCCCCCACCTCCTCGGCCCAATT
ACGGTTGCTGCGTATAGCTATATGTCGCTGGTGCCGGTGATTATGCCGCCGATTATCCGCACGCTCACCACACCGGCAGA
ACGACAGATTCGGATGGCATACGTCACCCGTCCGGTCAGCCGCCGCACACGTATTCTGTTTCCCATCGTGACCACCGTAA
TTGTGGGTATTCTGGTACCCTTCGCCATTCCGCTCATCGGCATGCTGATGCTGGGCAACCTGATGCGCGAATCGGGTGTT
GTACAGCGCTTAACCAACACCTCGGCCCAGGAGCTGGCGAATATTGTCACCCTCTTCCTCGGCCTGGCGATTGGCTCAAC
CATGGAGGGAACCCGTTTTCTGCAACCGGCAACGCTGGCGATCCTGGCCCTGGGTATGCTGGCCTTTGCCCTCGACACAG
CCGCCGGTCTCCTGTTCGGCAAATTCCTGAATCTCCTGAGCCGTGGAAGGTTCAACCCCATGATCGGTGCCGCCGGAATC
AGCGCCTTTCCGATGGCGGCGCGGGTGGTGCAGAAGCTGGCAAACGAAGAAGATTTTGAAAACTTCCTGCTGATGCACGC
AATGGGAGCCAACGCCGCCGGCCAGATTGCGAGTGTGGTAGCTGGTGGTGTGCTGTTGGCCTTGATGGGGGCGGGGAGGT
AG

Upstream 100 bases:

>100_bases
ACGTGATGGCGTCATTTCTGCCATCCTGGTCAAAACCGGGCAAAGTGTCGGATACGGTGAACCGCTGGCTCAGATTGAAT
AACAGAGAATGGAACGATCT

Downstream 100 bases:

>100_bases
GAGGGAGGAGGTAGGAGGTAGGAGATAGGAGATAGAAGATAGGAGATAGAAGATAGGAGATAGAAGATAGGAGATAGAAG
ATAGGAGATAGAAGATAGGA

Product: sodium ion-translocating decarboxylase subunit beta

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MSELIASIFAGIGALSWQSLVMIGIAALLFYLAIVHQYEPLLLLPIGAGALLANLPLSPLAGEDGLLTILYNAGVGNELF
PLLIFIGIGALTDFSPLLSNPRMVLTGAAGQFGIFGTLLLALALGFSREESASIGIIGAIDGPTSIYVSSLLAPHLLGPI
TVAAYSYMSLVPVIMPPIIRTLTTPAERQIRMAYVTRPVSRRTRILFPIVTTVIVGILVPFAIPLIGMLMLGNLMRESGV
VQRLTNTSAQELANIVTLFLGLAIGSTMEGTRFLQPATLAILALGMLAFALDTAAGLLFGKFLNLLSRGRFNPMIGAAGI
SAFPMAARVVQKLANEEDFENFLLMHAMGANAAGQIASVVAGGVLLALMGAGR

Sequences:

>Translated_373_residues
MSELIASIFAGIGALSWQSLVMIGIAALLFYLAIVHQYEPLLLLPIGAGALLANLPLSPLAGEDGLLTILYNAGVGNELF
PLLIFIGIGALTDFSPLLSNPRMVLTGAAGQFGIFGTLLLALALGFSREESASIGIIGAIDGPTSIYVSSLLAPHLLGPI
TVAAYSYMSLVPVIMPPIIRTLTTPAERQIRMAYVTRPVSRRTRILFPIVTTVIVGILVPFAIPLIGMLMLGNLMRESGV
VQRLTNTSAQELANIVTLFLGLAIGSTMEGTRFLQPATLAILALGMLAFALDTAAGLLFGKFLNLLSRGRFNPMIGAAGI
SAFPMAARVVQKLANEEDFENFLLMHAMGANAAGQIASVVAGGVLLALMGAGR
>Mature_372_residues
SELIASIFAGIGALSWQSLVMIGIAALLFYLAIVHQYEPLLLLPIGAGALLANLPLSPLAGEDGLLTILYNAGVGNELFP
LLIFIGIGALTDFSPLLSNPRMVLTGAAGQFGIFGTLLLALALGFSREESASIGIIGAIDGPTSIYVSSLLAPHLLGPIT
VAAYSYMSLVPVIMPPIIRTLTTPAERQIRMAYVTRPVSRRTRILFPIVTTVIVGILVPFAIPLIGMLMLGNLMRESGVV
QRLTNTSAQELANIVTLFLGLAIGSTMEGTRFLQPATLAILALGMLAFALDTAAGLLFGKFLNLLSRGRFNPMIGAAGIS
AFPMAARVVQKLANEEDFENFLLMHAMGANAAGQIASVVAGGVLLALMGAGR

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 39070; Mature: 38939

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELIASIFAGIGALSWQSLVMIGIAALLFYLAIVHQYEPLLLLPIGAGALLANLPLSPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCC
AGEDGLLTILYNAGVGNELFPLLIFIGIGALTDFSPLLSNPRMVLTGAAGQFGIFGTLLL
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCHHHHHHHHH
ALALGFSREESASIGIIGAIDGPTSIYVSSLLAPHLLGPITVAAYSYMSLVPVIMPPIIR
HHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTTPAERQIRMAYVTRPVSRRTRILFPIVTTVIVGILVPFAIPLIGMLMLGNLMRESGV
HHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQRLTNTSAQELANIVTLFLGLAIGSTMEGTRFLQPATLAILALGMLAFALDTAAGLLFG
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
KFLNLLSRGRFNPMIGAAGISAFPMAARVVQKLANEEDFENFLLMHAMGANAAGQIASVV
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHH
AGGVLLALMGAGR
HHHHHHHHHCCCC
>Mature Secondary Structure 
SELIASIFAGIGALSWQSLVMIGIAALLFYLAIVHQYEPLLLLPIGAGALLANLPLSPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCC
AGEDGLLTILYNAGVGNELFPLLIFIGIGALTDFSPLLSNPRMVLTGAAGQFGIFGTLLL
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCHHHHHHHHH
ALALGFSREESASIGIIGAIDGPTSIYVSSLLAPHLLGPITVAAYSYMSLVPVIMPPIIR
HHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTTPAERQIRMAYVTRPVSRRTRILFPIVTTVIVGILVPFAIPLIGMLMLGNLMRESGV
HHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQRLTNTSAQELANIVTLFLGLAIGSTMEGTRFLQPATLAILALGMLAFALDTAAGLLFG
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
KFLNLLSRGRFNPMIGAAGISAFPMAARVVQKLANEEDFENFLLMHAMGANAAGQIASVV
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHH
AGGVLLALMGAGR
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]