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The map label for this gene is gcdB [H]

Identifier: 222526531

GI number: 222526531

Start: 4110545

End: 4111714

Strand: Reverse

Name: gcdB [H]

Synonym: Chy400_3298

Alternate gene names: 222526531

Gene position: 4111714-4110545 (Counterclockwise)

Preceding gene: 222526532

Following gene: 222526529

Centisome position: 78.04

GC content: 57.61

Gene sequence:

>1170_bases
ATGGAATGGCTGATTGGTTTTTTTGAAGCAAGCGGGATTGCCCATCTGGCATGGGGCAATCTGTTGATGATCGTCGTCGG
CTGTGTGTTCGTCTATCTGGCAATTGCCCGCAACTTCGAGCCACTCCTCCTGGTACCGATTGGATTCGGCATCATTCTCG
GCAATATGCCATTTGAACCAGGCATGGGGCAGGGTGTCTACGACCAGGGCAGCGTCTTGAACTACATCTACTTCGGAGTC
ATCGCCGGCGTCTTCCCGCCCCTCATCTTTCTCGGCATCGGGGCAATGACCGACTTCTCGGCCCTGATTGCCCAGCCGCG
CCTGATCTTGCTCGGTGCTGCTGCTCAGCTCGGTATCTTCTTCACGCTCTTAATGGCTGTCTTTCTGGGACAGTATCTCC
CGTTCCTCGATCTGGCCGACGCTAACGATCCTCTTCGTTTGCTGCGGGCTGCGGCGGCAATTGGGATCATCGGCGGGGCT
GATGGGCCAACGGCCATTTTCATTGCCTCACGGCTCGCACCTGATCTCCTCGGCGCGATTGCCGTCTCTGCCTACTCGTA
CATGGCCCTGGTGCCGGTCATTCAACCACCGATCATGCGCCTGCTCACCACCCGCGAAGAGCGCCTGATCCGCATGCCAC
CACCCGCCGAGGTCAGCCGCACACAACGTATCCTGTTCCCGATCATTGGCCTGATCGTCTGTGTGCTCATCGTCCCGGAT
ACATTACCGCTGCTTGGCATGCTCTTCTTCGGCAATCTCCTCAAAGAGAGCGGTGTCACCGAACGACTGGCCAAAACAGC
ACGCAGCGCCCTGATCGATAGCGTGACCATTATGCTCGGTCTGACCGTCGGTGCCAGTACGCAGGCCAGCAACTTTCTCA
CCCCGCGATCTATCGCCATCTTTGCCCTTGGTGCCTGCGCATTTGCCATCTCGACCGCAGGCGGTGTCTTGTTCGCCAAA
TTTTACAATCTCTTTACCCGTAACAAAATCAATCCGCTGATCGGCGCGGCTGGCGTGTCAGCCGTCCCAATGTCGGCACG
AGTTGCGCATACCGTTGCGCAGGCAGAGGATCGGCACAACTTCTTAATCTGGCAGGCAATGTGTCCAAACGTTGCCGGCG
TGATCGGATCGGCAGTGGCGGCAGGAGTCATGCTGGTCATTTTACGCTGA

Upstream 100 bases:

>100_bases
ATTCTAACGTTAGCTCACCGATTGCCGGCACCATCCGTGCCATCAATGTGAAAGTCGGCGACTCGGTGCGTCAAGGTCAA
CCACTCCTGGAGTTTGCCTG

Downstream 100 bases:

>100_bases
CCATTCCCAGCACCCGGCGTGCCAGTTGCGGCCATTCAGGCAAGAGCCGCAGAGCGGTACACAGCATGACCAAATCAACA
CTTCCGTCCTGAATGGCCGC

Product: sodium ion-translocating decarboxylase subunit beta

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MEWLIGFFEASGIAHLAWGNLLMIVVGCVFVYLAIARNFEPLLLVPIGFGIILGNMPFEPGMGQGVYDQGSVLNYIYFGV
IAGVFPPLIFLGIGAMTDFSALIAQPRLILLGAAAQLGIFFTLLMAVFLGQYLPFLDLADANDPLRLLRAAAAIGIIGGA
DGPTAIFIASRLAPDLLGAIAVSAYSYMALVPVIQPPIMRLLTTREERLIRMPPPAEVSRTQRILFPIIGLIVCVLIVPD
TLPLLGMLFFGNLLKESGVTERLAKTARSALIDSVTIMLGLTVGASTQASNFLTPRSIAIFALGACAFAISTAGGVLFAK
FYNLFTRNKINPLIGAAGVSAVPMSARVAHTVAQAEDRHNFLIWQAMCPNVAGVIGSAVAAGVMLVILR

Sequences:

>Translated_389_residues
MEWLIGFFEASGIAHLAWGNLLMIVVGCVFVYLAIARNFEPLLLVPIGFGIILGNMPFEPGMGQGVYDQGSVLNYIYFGV
IAGVFPPLIFLGIGAMTDFSALIAQPRLILLGAAAQLGIFFTLLMAVFLGQYLPFLDLADANDPLRLLRAAAAIGIIGGA
DGPTAIFIASRLAPDLLGAIAVSAYSYMALVPVIQPPIMRLLTTREERLIRMPPPAEVSRTQRILFPIIGLIVCVLIVPD
TLPLLGMLFFGNLLKESGVTERLAKTARSALIDSVTIMLGLTVGASTQASNFLTPRSIAIFALGACAFAISTAGGVLFAK
FYNLFTRNKINPLIGAAGVSAVPMSARVAHTVAQAEDRHNFLIWQAMCPNVAGVIGSAVAAGVMLVILR
>Mature_389_residues
MEWLIGFFEASGIAHLAWGNLLMIVVGCVFVYLAIARNFEPLLLVPIGFGIILGNMPFEPGMGQGVYDQGSVLNYIYFGV
IAGVFPPLIFLGIGAMTDFSALIAQPRLILLGAAAQLGIFFTLLMAVFLGQYLPFLDLADANDPLRLLRAAAAIGIIGGA
DGPTAIFIASRLAPDLLGAIAVSAYSYMALVPVIQPPIMRLLTTREERLIRMPPPAEVSRTQRILFPIIGLIVCVLIVPD
TLPLLGMLFFGNLLKESGVTERLAKTARSALIDSVTIMLGLTVGASTQASNFLTPRSIAIFALGACAFAISTAGGVLFAK
FYNLFTRNKINPLIGAAGVSAVPMSARVAHTVAQAEDRHNFLIWQAMCPNVAGVIGSAVAAGVMLVILR

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 41260; Mature: 41260

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWLIGFFEASGIAHLAWGNLLMIVVGCVFVYLAIARNFEPLLLVPIGFGIILGNMPFEP
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCCCCCC
GMGQGVYDQGSVLNYIYFGVIAGVFPPLIFLGIGAMTDFSALIAQPRLILLGAAAQLGIF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHH
FTLLMAVFLGQYLPFLDLADANDPLRLLRAAAAIGIIGGADGPTAIFIASRLAPDLLGAI
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHH
AVSAYSYMALVPVIQPPIMRLLTTREERLIRMPPPAEVSRTQRILFPIIGLIVCVLIVPD
HHHHHHHHHHHHHHCHHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC
TLPLLGMLFFGNLLKESGVTERLAKTARSALIDSVTIMLGLTVGASTQASNFLTPRSIAI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHH
FALGACAFAISTAGGVLFAKFYNLFTRNKINPLIGAAGVSAVPMSARVAHTVAQAEDRHN
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCC
FLIWQAMCPNVAGVIGSAVAAGVMLVILR
EEEEHHHCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEWLIGFFEASGIAHLAWGNLLMIVVGCVFVYLAIARNFEPLLLVPIGFGIILGNMPFEP
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCCCCCC
GMGQGVYDQGSVLNYIYFGVIAGVFPPLIFLGIGAMTDFSALIAQPRLILLGAAAQLGIF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHH
FTLLMAVFLGQYLPFLDLADANDPLRLLRAAAAIGIIGGADGPTAIFIASRLAPDLLGAI
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHH
AVSAYSYMALVPVIQPPIMRLLTTREERLIRMPPPAEVSRTQRILFPIIGLIVCVLIVPD
HHHHHHHHHHHHHHCHHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC
TLPLLGMLFFGNLLKESGVTERLAKTARSALIDSVTIMLGLTVGASTQASNFLTPRSIAI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHH
FALGACAFAISTAGGVLFAKFYNLFTRNKINPLIGAAGVSAVPMSARVAHTVAQAEDRHN
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCC
FLIWQAMCPNVAGVIGSAVAAGVMLVILR
EEEEHHHCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]