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The map label for this gene is secD [H]

Identifier: 222526506

GI number: 222526506

Start: 4080744

End: 4082135

Strand: Reverse

Name: secD [H]

Synonym: Chy400_3273

Alternate gene names: 222526506

Gene position: 4082135-4080744 (Counterclockwise)

Preceding gene: 222526507

Following gene: 222526505

Centisome position: 77.48

GC content: 56.61

Gene sequence:

>1392_bases
GTGCAGAACCGTAACATTCTAGCGCTTATCATCACGATCATTGCGACTGGTCTGGCACTGGCGATTAATTTCGCACCCAA
CAACACCTTCCTGGGCCGCGATGTCAGTGTGCGGCTTGGGCTTGACTTACAGGGTGGGATTCAGGTGCTGTTGCGCTCAG
CCGATCCCGATGCCACTGCCGACGAGATTGCCACGGCGGCGCGTGTTATCGAGCAGCGGGTTAATGGTCTCGGTGTTGGC
GAAACGGTTGTTCAGCAAGCGGGAAATAACCGCATTATTGTTGAGCTGCCAGGGGTAGCCAATCCCGAACAGGCTATCGA
GACCCTGCGCGGCACCGGCCGGCTCGAGTTCATCGACTCGCAAGGGGAATTCCTGGCCGACGGCGCCATTGTGCGGACAT
CGAGTAGCCCCATTCCGCCACCTCAGTTGCTCGAAAGCAGAAACATTACCGATCCTACCACCCTCGGCCCTATCTACCAG
AGCATTACTGATGGTGCCGATCTGGACACCAGTGCCGTACAACCGACCTTCTCGCAGGGTGGCACCCTCGGCAGTCGTCC
GGCCGTCTCGTTTGCCTTCCGGGGTGAGTCAGCACAGCGGCTGGCATCCTTTACCGCAGCGAATGTTGGCCGGCCAATGT
GTATTGTGCTCGACAACACAGTTGTGAGTTGCCCGGTGATTAATGCTGCGCTGACGGACGGTTCTGGAATCATTGAAGTG
AGCAACGAGGACGAGCGAACCCGTATCTTCAATCAGTTGAAATACGGTGCCCTGCCGGTACCCCTGGTAGTCGAGACAAG
TCGTACTGTGACGGCAACCCTCGGTCAGGAGAGTGTACAGGCCAGTATCACTGCAGGAATTATTGGGCTGGCAGTAGTCG
CTATCTTCATGATCTTGTTCTACCGCGGCCCAGGATTGATTGCAACGGTGGCGCTGCTGATTTACACGATTATCAGCTTC
GCGATTTACCGTCTGATCCCAGTCACCCTGACTCTGCCGGGCATTGCCGGTTTCATCCTTTCGATTGGATTGGCGGTTGA
TGCCAACGTCTTGATCTTCGCCCGTCTACGCGAAGAGTACCGTCGCGGTCGTGACATTCGCAGTGCGCTCGAACTAGGGT
TTGTCGAGTCGTGGCCAGCCATCCGGGACTCGAGTGTTTCAACGCTGATTACCAGCATTGTCCTGTTTATGTTTGGCAAC
AGCTTCGGCGTCAGCCTGATTAAGGGCTTTGCCCTGACCCTGGGACTTGGCATCGTCGTTAGTCTGTTTACGGCGCTTGT
TGTGTCGCGAACCTTCCTGCGGCTGGTACTGCCTCTGTTCAGCGATGAACGAGCCTGGTGGTTTGGTGTAGATCGCCGCG
AGCCATCACCAACGGTACAGACCGCCGCGTAA

Upstream 100 bases:

>100_bases
GAGATAACTTTGTCATTCTTTGCCGGGATTATCTTGACGCGCTGTCGCTGTCGGCCTATAATGGGCCGGCTTTTTCGATA
CGAGTGAGGAGCACGCAACC

Downstream 100 bases:

>100_bases
CAGGAAACGAATTCGGTCGATCACACGGACACCGCGCAATACTGGAGTAACGCCTGTATGGAACATCTCGTCCGCCGTCG
TTATTGGTGGTTTGCCTTTT

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MQNRNILALIITIIATGLALAINFAPNNTFLGRDVSVRLGLDLQGGIQVLLRSADPDATADEIATAARVIEQRVNGLGVG
ETVVQQAGNNRIIVELPGVANPEQAIETLRGTGRLEFIDSQGEFLADGAIVRTSSSPIPPPQLLESRNITDPTTLGPIYQ
SITDGADLDTSAVQPTFSQGGTLGSRPAVSFAFRGESAQRLASFTAANVGRPMCIVLDNTVVSCPVINAALTDGSGIIEV
SNEDERTRIFNQLKYGALPVPLVVETSRTVTATLGQESVQASITAGIIGLAVVAIFMILFYRGPGLIATVALLIYTIISF
AIYRLIPVTLTLPGIAGFILSIGLAVDANVLIFARLREEYRRGRDIRSALELGFVESWPAIRDSSVSTLITSIVLFMFGN
SFGVSLIKGFALTLGLGIVVSLFTALVVSRTFLRLVLPLFSDERAWWFGVDRREPSPTVQTAA

Sequences:

>Translated_463_residues
MQNRNILALIITIIATGLALAINFAPNNTFLGRDVSVRLGLDLQGGIQVLLRSADPDATADEIATAARVIEQRVNGLGVG
ETVVQQAGNNRIIVELPGVANPEQAIETLRGTGRLEFIDSQGEFLADGAIVRTSSSPIPPPQLLESRNITDPTTLGPIYQ
SITDGADLDTSAVQPTFSQGGTLGSRPAVSFAFRGESAQRLASFTAANVGRPMCIVLDNTVVSCPVINAALTDGSGIIEV
SNEDERTRIFNQLKYGALPVPLVVETSRTVTATLGQESVQASITAGIIGLAVVAIFMILFYRGPGLIATVALLIYTIISF
AIYRLIPVTLTLPGIAGFILSIGLAVDANVLIFARLREEYRRGRDIRSALELGFVESWPAIRDSSVSTLITSIVLFMFGN
SFGVSLIKGFALTLGLGIVVSLFTALVVSRTFLRLVLPLFSDERAWWFGVDRREPSPTVQTAA
>Mature_463_residues
MQNRNILALIITIIATGLALAINFAPNNTFLGRDVSVRLGLDLQGGIQVLLRSADPDATADEIATAARVIEQRVNGLGVG
ETVVQQAGNNRIIVELPGVANPEQAIETLRGTGRLEFIDSQGEFLADGAIVRTSSSPIPPPQLLESRNITDPTTLGPIYQ
SITDGADLDTSAVQPTFSQGGTLGSRPAVSFAFRGESAQRLASFTAANVGRPMCIVLDNTVVSCPVINAALTDGSGIIEV
SNEDERTRIFNQLKYGALPVPLVVETSRTVTATLGQESVQASITAGIIGLAVVAIFMILFYRGPGLIATVALLIYTIISF
AIYRLIPVTLTLPGIAGFILSIGLAVDANVLIFARLREEYRRGRDIRSALELGFVESWPAIRDSSVSTLITSIVLFMFGN
SFGVSLIKGFALTLGLGIVVSLFTALVVSRTFLRLVLPLFSDERAWWFGVDRREPSPTVQTAA

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=422, Percent_Identity=31.9905213270142, Blast_Score=188, Evalue=7e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 49370; Mature: 49370

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNRNILALIITIIATGLALAINFAPNNTFLGRDVSVRLGLDLQGGIQVLLRSADPDATA
CCCCCHHHHHHHHHHHHHHEEEEECCCCCEECCCEEEEECCCCCCCHHHHEECCCCCCCH
DEIATAARVIEQRVNGLGVGETVVQQAGNNRIIVELPGVANPEQAIETLRGTGRLEFIDS
HHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC
QGEFLADGAIVRTSSSPIPPPQLLESRNITDPTTLGPIYQSITDGADLDTSAVQPTFSQG
CCCEEECCEEEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHCCCCHHCC
GTLGSRPAVSFAFRGESAQRLASFTAANVGRPMCIVLDNTVVSCPVINAALTDGSGIIEV
CCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCEEECCCEEEEEECCCCEEEE
SNEDERTRIFNQLKYGALPVPLVVETSRTVTATLGQESVQASITAGIIGLAVVAIFMILF
CCCCHHHHHHHHHHCCCCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
YRGPGLIATVALLIYTIISFAIYRLIPVTLTLPGIAGFILSIGLAVDANVLIFARLREEY
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RRGRDIRSALELGFVESWPAIRDSSVSTLITSIVLFMFGNSFGVSLIKGFALTLGLGIVV
HCCHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
SLFTALVVSRTFLRLVLPLFSDERAWWFGVDRREPSPTVQTAA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MQNRNILALIITIIATGLALAINFAPNNTFLGRDVSVRLGLDLQGGIQVLLRSADPDATA
CCCCCHHHHHHHHHHHHHHEEEEECCCCCEECCCEEEEECCCCCCCHHHHEECCCCCCCH
DEIATAARVIEQRVNGLGVGETVVQQAGNNRIIVELPGVANPEQAIETLRGTGRLEFIDS
HHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC
QGEFLADGAIVRTSSSPIPPPQLLESRNITDPTTLGPIYQSITDGADLDTSAVQPTFSQG
CCCEEECCEEEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHCCCCHHCC
GTLGSRPAVSFAFRGESAQRLASFTAANVGRPMCIVLDNTVVSCPVINAALTDGSGIIEV
CCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCEEECCCEEEEEECCCCEEEE
SNEDERTRIFNQLKYGALPVPLVVETSRTVTATLGQESVQASITAGIIGLAVVAIFMILF
CCCCHHHHHHHHHHCCCCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
YRGPGLIATVALLIYTIISFAIYRLIPVTLTLPGIAGFILSIGLAVDANVLIFARLREEY
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RRGRDIRSALELGFVESWPAIRDSSVSTLITSIVLFMFGNSFGVSLIKGFALTLGLGIVV
HCCHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
SLFTALVVSRTFLRLVLPLFSDERAWWFGVDRREPSPTVQTAA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]