Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 222526505

GI number: 222526505

Start: 4079679

End: 4080686

Strand: Reverse

Name: secF [H]

Synonym: Chy400_3272

Alternate gene names: 222526505

Gene position: 4080686-4079679 (Counterclockwise)

Preceding gene: 222526506

Following gene: 222526504

Centisome position: 77.45

GC content: 56.25

Gene sequence:

>1008_bases
ATGGAACATCTCGTCCGCCGTCGTTATTGGTGGTTTGCCTTTTCACTGCTGATTATCTTGCCCGGCCTGTATATGCTCTT
CCTGCACCCGTTGCTGACGACGGGACGACCGGGAATTGGCTTACGACCGAGCATTGACTTCGCCGGTGGCGCATTGTGGG
AATTGCGCTTTCCCGATGTTACGCCTGAGACATTAAGCACCGACCGGATCGCGCAGGCTTTTGCGGAGGCCGGCTTCGAG
AGCGCACAGGTTCAGCTCAGCCCAACGGTGATTGACGGCCAACCGGTAGCTGCCGCGCTGGTGCGAACACGACCATTGAG
CGAGTCTGACCCAAATGCCGAAATCGATGCCGTTACGAAAGCCCTGACCGACGCTTTTGGCACAGTCAGTCGTGAGCGGC
TAGAGAGCGTTGGGCCAACAGTCAGTGCCGAGTCAACGCGCAGCGCTATCATTGCCGTGCTCGGGGCTTCGTTGATCATT
CTGCTCTACCTGACATGGGCGTTTCGCAAGGCGCCACATCCTTTTCGTTACGGTGTCTGTGCCCTGATTGCGATGCTGCA
CGATGTGTTAGTCGTGCTAGGCATTGCTGCTATCCTGGGAGCTACCATCGGGTTAGAGGTTGATGCTCTCTTCCTGACGG
CCTTGCTCACCACACTGAGCTTCTCGGTACACGATACGATTGTGGTGTTTGATCGCATCCGTGAAAATCTAATCAATCGT
CATCCCGCCGAGACGTTCGATGACATCGTGAACCACAGTCTGGTGCAAACCCTGCCACGGTCGATCAATGCGCAGTTGAC
GACCTTCTTCACCCTGACAGCGCTGCTGCTGTTTGGCGGCGATACCATCCGCAATTTTGTCTTAATCCTGCTTATCGGGT
TGGTCAGCGGAACGTACTCGTCGATCTTCAACGCGGCGCAATTGCTGGTGGTGTGGGAGCATCGCGAGTGGCGCAACTGG
TTTAAGCGTGGCCGCCAGGATGAAGTAGAGGTTCGCTCAGGAGCATAG

Upstream 100 bases:

>100_bases
AGATCGCCGCGAGCCATCACCAACGGTACAGACCGCCGCGTAACAGGAAACGAATTCGGTCGATCACACGGACACCGCGC
AATACTGGAGTAACGCCTGT

Downstream 100 bases:

>100_bases
AACAGAGTATAAAAGTTACCTTCAGTACGGGGCAGGTTCGCGACCTGCCCCTTTTCTGTCACCGGCAACAACGACGTGAG
TGAAAACCTGGCTTCTGTAC

Product: protein-export membrane protein SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MEHLVRRRYWWFAFSLLIILPGLYMLFLHPLLTTGRPGIGLRPSIDFAGGALWELRFPDVTPETLSTDRIAQAFAEAGFE
SAQVQLSPTVIDGQPVAAALVRTRPLSESDPNAEIDAVTKALTDAFGTVSRERLESVGPTVSAESTRSAIIAVLGASLII
LLYLTWAFRKAPHPFRYGVCALIAMLHDVLVVLGIAAILGATIGLEVDALFLTALLTTLSFSVHDTIVVFDRIRENLINR
HPAETFDDIVNHSLVQTLPRSINAQLTTFFTLTALLLFGGDTIRNFVLILLIGLVSGTYSSIFNAAQLLVVWEHREWRNW
FKRGRQDEVEVRSGA

Sequences:

>Translated_335_residues
MEHLVRRRYWWFAFSLLIILPGLYMLFLHPLLTTGRPGIGLRPSIDFAGGALWELRFPDVTPETLSTDRIAQAFAEAGFE
SAQVQLSPTVIDGQPVAAALVRTRPLSESDPNAEIDAVTKALTDAFGTVSRERLESVGPTVSAESTRSAIIAVLGASLII
LLYLTWAFRKAPHPFRYGVCALIAMLHDVLVVLGIAAILGATIGLEVDALFLTALLTTLSFSVHDTIVVFDRIRENLINR
HPAETFDDIVNHSLVQTLPRSINAQLTTFFTLTALLLFGGDTIRNFVLILLIGLVSGTYSSIFNAAQLLVVWEHREWRNW
FKRGRQDEVEVRSGA
>Mature_335_residues
MEHLVRRRYWWFAFSLLIILPGLYMLFLHPLLTTGRPGIGLRPSIDFAGGALWELRFPDVTPETLSTDRIAQAFAEAGFE
SAQVQLSPTVIDGQPVAAALVRTRPLSESDPNAEIDAVTKALTDAFGTVSRERLESVGPTVSAESTRSAIIAVLGASLII
LLYLTWAFRKAPHPFRYGVCALIAMLHDVLVVLGIAAILGATIGLEVDALFLTALLTTLSFSVHDTIVVFDRIRENLINR
HPAETFDDIVNHSLVQTLPRSINAQLTTFFTLTALLLFGGDTIRNFVLILLIGLVSGTYSSIFNAAQLLVVWEHREWRNW
FKRGRQDEVEVRSGA

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=307, Percent_Identity=29.3159609120521, Blast_Score=115, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 37020; Mature: 37020

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHLVRRRYWWFAFSLLIILPGLYMLFLHPLLTTGRPGIGLRPSIDFAGGALWELRFPDV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCC
TPETLSTDRIAQAFAEAGFESAQVQLSPTVIDGQPVAAALVRTRPLSESDPNAEIDAVTK
CCHHCCHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHH
ALTDAFGTVSRERLESVGPTVSAESTRSAIIAVLGASLIILLYLTWAFRKAPHPFRYGVC
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ALIAMLHDVLVVLGIAAILGATIGLEVDALFLTALLTTLSFSVHDTIVVFDRIRENLINR
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HPAETFDDIVNHSLVQTLPRSINAQLTTFFTLTALLLFGGDTIRNFVLILLIGLVSGTYS
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SIFNAAQLLVVWEHREWRNWFKRGRQDEVEVRSGA
HHHHHHHHHHEECCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MEHLVRRRYWWFAFSLLIILPGLYMLFLHPLLTTGRPGIGLRPSIDFAGGALWELRFPDV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCC
TPETLSTDRIAQAFAEAGFESAQVQLSPTVIDGQPVAAALVRTRPLSESDPNAEIDAVTK
CCHHCCHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHH
ALTDAFGTVSRERLESVGPTVSAESTRSAIIAVLGASLIILLYLTWAFRKAPHPFRYGVC
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ALIAMLHDVLVVLGIAAILGATIGLEVDALFLTALLTTLSFSVHDTIVVFDRIRENLINR
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HPAETFDDIVNHSLVQTLPRSINAQLTTFFTLTALLLFGGDTIRNFVLILLIGLVSGTYS
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SIFNAAQLLVVWEHREWRNWFKRGRQDEVEVRSGA
HHHHHHHHHHEECCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]