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The map label for this gene is ydhC [H]

Identifier: 222526249

GI number: 222526249

Start: 3721254

End: 3721949

Strand: Reverse

Name: ydhC [H]

Synonym: Chy400_3013

Alternate gene names: 222526249

Gene position: 3721949-3721254 (Counterclockwise)

Preceding gene: 222526250

Following gene: 222526248

Centisome position: 70.64

GC content: 51.58

Gene sequence:

>696_bases
ATGTCTACTGATCCATCACCCCATCGCCAATTGCGTAAACTGGTTGCCGATCAGTTACGTGCGGCTATCCTGGAAGGCCG
GTACAAACCTGGCGAGTGGCTACGCCAGGAAAAGCTGGCGCAAGAACTCAATGTCAGCCAGATGCCGGTTCGTGAAGCCT
TAAAAGAACTGACGGCCGAAGGACTTATCGAGCACGTACCCTACCGCGGAGTACGTGTGATCGCCTTTTCGCTGACTGAT
ATTGAGGATTTATACGAACATCGCGCCTTTTTAGAGAGTAGAGCTGCGGCATTTGCTGCGGCACGGATCAGTGATGAAGA
GTTAGCAAACATTGCTCAGGTGCTGGAGCAAATGAATATCTATTCCGCACCTGAGCAGGTCAATGAATATCGGCAACTGA
ATCGCACATTTCACCAGCTTATCTTTACAGCATCTGGGCGAGAATACCTCATTCGTACCCTCAATCAGATGTGGGCGACC
TTCCCAACAATGCTCATCGGCAACTTTGCCGCTACCGCCCAGCGCCCCCTCTACAAGCGAGACGAGACTGACACGCTTGA
ACACCTTGCCATCTTTGAGGCGTTAAAAAACCATCAACCTGAAGCAGCCGAGCAGGCTATGCGCACTCATATCCTCAACA
CTGTACGGTATCTGCGCGATTCACTGCAAAGGCAAGCAGACTTGGAGCAGCCATGA

Upstream 100 bases:

>100_bases
TCATTTGCGCTCAAAGATACAACACACCCCTTGACGGGCGCCGGGAAGTCTGATAAGATTGACATTAGATCAAATATCTA
ATATCTAATATCTAAATTTT

Downstream 100 bases:

>100_bases
AGATATTGATGCCCATTGGGGGTGCTCTCGATCACGAAAACCCTCATATTATGCGTGAATTTGTCGAGCGTTCAGGCGGA
GCGCAAGCGCGGATCGTGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSTDPSPHRQLRKLVADQLRAAILEGRYKPGEWLRQEKLAQELNVSQMPVREALKELTAEGLIEHVPYRGVRVIAFSLTD
IEDLYEHRAFLESRAAAFAAARISDEELANIAQVLEQMNIYSAPEQVNEYRQLNRTFHQLIFTASGREYLIRTLNQMWAT
FPTMLIGNFAATAQRPLYKRDETDTLEHLAIFEALKNHQPEAAEQAMRTHILNTVRYLRDSLQRQADLEQP

Sequences:

>Translated_231_residues
MSTDPSPHRQLRKLVADQLRAAILEGRYKPGEWLRQEKLAQELNVSQMPVREALKELTAEGLIEHVPYRGVRVIAFSLTD
IEDLYEHRAFLESRAAAFAAARISDEELANIAQVLEQMNIYSAPEQVNEYRQLNRTFHQLIFTASGREYLIRTLNQMWAT
FPTMLIGNFAATAQRPLYKRDETDTLEHLAIFEALKNHQPEAAEQAMRTHILNTVRYLRDSLQRQADLEQP
>Mature_230_residues
STDPSPHRQLRKLVADQLRAAILEGRYKPGEWLRQEKLAQELNVSQMPVREALKELTAEGLIEHVPYRGVRVIAFSLTDI
EDLYEHRAFLESRAAAFAAARISDEELANIAQVLEQMNIYSAPEQVNEYRQLNRTFHQLIFTASGREYLIRTLNQMWATF
PTMLIGNFAATAQRPLYKRDETDTLEHLAIFEALKNHQPEAAEQAMRTHILNTVRYLRDSLQRQADLEQP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=204, Percent_Identity=28.921568627451, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082149, Length=138, Percent_Identity=31.1594202898551, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789353, Length=231, Percent_Identity=25.974025974026, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26701; Mature: 26569

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDPSPHRQLRKLVADQLRAAILEGRYKPGEWLRQEKLAQELNVSQMPVREALKELTAE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
GLIEHVPYRGVRVIAFSLTDIEDLYEHRAFLESRAAAFAAARISDEELANIAQVLEQMNI
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
YSAPEQVNEYRQLNRTFHQLIFTASGREYLIRTLNQMWATFPTMLIGNFAATAQRPLYKR
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DETDTLEHLAIFEALKNHQPEAAEQAMRTHILNTVRYLRDSLQRQADLEQP
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STDPSPHRQLRKLVADQLRAAILEGRYKPGEWLRQEKLAQELNVSQMPVREALKELTAE
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
GLIEHVPYRGVRVIAFSLTDIEDLYEHRAFLESRAAAFAAARISDEELANIAQVLEQMNI
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
YSAPEQVNEYRQLNRTFHQLIFTASGREYLIRTLNQMWATFPTMLIGNFAATAQRPLYKR
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DETDTLEHLAIFEALKNHQPEAAEQAMRTHILNTVRYLRDSLQRQADLEQP
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]