Click here to switch to the map view.

The map label for this gene is secY [H]

Identifier: 222525823

GI number: 222525823

Start: 3217133

End: 3218485

Strand: Direct

Name: secY [H]

Synonym: Chy400_2576

Alternate gene names: 222525823

Gene position: 3217133-3218485 (Clockwise)

Preceding gene: 222525822

Following gene: 222525824

Centisome position: 61.06

GC content: 52.11

Gene sequence:

>1353_bases
ATGCTACAGGCTGTACTTCGTGCTATTCAGTTGCCCGATCTACGGCGTCGCATCCTCTTCACACTGGGGATGCTATTCCT
GTTTCGTCTGATCGCGCATATTCCGGTACCTAACATCAATCCGACAACACTCGAGCAGTTGCGCCAGGCGCTGGCAACCA
ACCAACTGGCTCAGTTACTGAATCTCTTTGCCGGTGGGGCACTGGAGAATTTCTCGGTTGCAGCAATGGGGGTTTACCCC
TACATTACGGCTCAAATCATTATACAGTTGCTGCAACCCTTGATCCCTGCTCTTCAGGAATTGCAGAAAGAAGGCGAACA
GGGTCGTCTGCGGCTGAATCGCTATCAGTTGTGGTTGACTGTTCCGCTGGCTTATTTGCAGGCGTATGGTCAGACTCTGA
CCCTCGAACGCACGATTAATCCAAACAACGACCCGACACTGTCGTTGTTCCGTACTCCGTTCGATCTGGGTGCCAACTTT
TTGCCCACATTTACTGTACTGACGACGATGGTCGCCGGTACCATGCTACTGATCTGGTTGGGTGAGCAGATCAATGAACG
TGGTATTGGTAATGGTATCTCGATCATCATCTTCGGGGGGATTGTTTCGCGCCTACCGGGATTGATCATCCAGGGCTTCC
AGATCAGCCAGGCGGGTGATTTCAGTACCATTTTGGGTCTGATAGGCTTTGTGGCAATTGCACTGTTGACAATTGTTGGT
ATTGTCCTGGTGCAGGAAGGTCAGCGTCGGATTCGTGTCCAGTACGCCCGACGTGTGCGCGGCAATAAGGTCTACGGTGG
TCAGAGCAGCTTCATCCCGCTGAAGGTGAATTCGGCTGGTATGATCCCGTTGATCTTCGCTCAAAGCATTATCATCTTCC
CTGGCATTGTGGCATCGTGGTTCTATCGCCCCGGTGCCGAAGGGATTGGGAATGCCATTGCTGGCTTTTTCTACAATACC
TTTAACCCAACCGGTCAGGGTGGTGGCATTGTCTACATGACGCTGCTCTTCCTGTTGACAGTGGGATTCACCTATTTCTA
TACGGTTGTCATCTTCACCCAGCAGGACCTGGCCGAAAATCTACAGCGCAACGGTGGTTTTATTCCCGGCATTCGCCCGG
GCAAGAAGACGGAAGAGTATTTGATGAAGGTGCTCAACCGTATTACTCTGGCCGGTGCGCTCTTCCTGGGCCTGATTGCC
GTGCTTCCGTTCCTGACCCAATCGATTACCGGCGTCCAGATTGGTTTGGGTAGTACGGCGCTCTTGATCGTGGTCGGTGT
TGCGGTAGACACAATGCGTCAATTAGAGGCGCAGTTGATCATGCGCGACTATGAAGGTTTTCTGACCAGATAG

Upstream 100 bases:

>100_bases
CTCACGCGGGCCAAATCCGAGCATGCGCAATGCCCGCCAGTCGTAATCGGTCATGTGGCGAGAACCTCACAGGTTCTCGC
CATTCATAGGAAGTAGTATC

Downstream 100 bases:

>100_bases
TCGTTGCACACAAACCGGGAAAATGTAGTACAATAAAGCTCGTTGCTCGCCGGCATGCCGGTTGGGCAGCGTCTTTGTGA
GACAGGCAGATGGTCATACC

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MLQAVLRAIQLPDLRRRILFTLGMLFLFRLIAHIPVPNINPTTLEQLRQALATNQLAQLLNLFAGGALENFSVAAMGVYP
YITAQIIIQLLQPLIPALQELQKEGEQGRLRLNRYQLWLTVPLAYLQAYGQTLTLERTINPNNDPTLSLFRTPFDLGANF
LPTFTVLTTMVAGTMLLIWLGEQINERGIGNGISIIIFGGIVSRLPGLIIQGFQISQAGDFSTILGLIGFVAIALLTIVG
IVLVQEGQRRIRVQYARRVRGNKVYGGQSSFIPLKVNSAGMIPLIFAQSIIIFPGIVASWFYRPGAEGIGNAIAGFFYNT
FNPTGQGGGIVYMTLLFLLTVGFTYFYTVVIFTQQDLAENLQRNGGFIPGIRPGKKTEEYLMKVLNRITLAGALFLGLIA
VLPFLTQSITGVQIGLGSTALLIVVGVAVDTMRQLEAQLIMRDYEGFLTR

Sequences:

>Translated_450_residues
MLQAVLRAIQLPDLRRRILFTLGMLFLFRLIAHIPVPNINPTTLEQLRQALATNQLAQLLNLFAGGALENFSVAAMGVYP
YITAQIIIQLLQPLIPALQELQKEGEQGRLRLNRYQLWLTVPLAYLQAYGQTLTLERTINPNNDPTLSLFRTPFDLGANF
LPTFTVLTTMVAGTMLLIWLGEQINERGIGNGISIIIFGGIVSRLPGLIIQGFQISQAGDFSTILGLIGFVAIALLTIVG
IVLVQEGQRRIRVQYARRVRGNKVYGGQSSFIPLKVNSAGMIPLIFAQSIIIFPGIVASWFYRPGAEGIGNAIAGFFYNT
FNPTGQGGGIVYMTLLFLLTVGFTYFYTVVIFTQQDLAENLQRNGGFIPGIRPGKKTEEYLMKVLNRITLAGALFLGLIA
VLPFLTQSITGVQIGLGSTALLIVVGVAVDTMRQLEAQLIMRDYEGFLTR
>Mature_450_residues
MLQAVLRAIQLPDLRRRILFTLGMLFLFRLIAHIPVPNINPTTLEQLRQALATNQLAQLLNLFAGGALENFSVAAMGVYP
YITAQIIIQLLQPLIPALQELQKEGEQGRLRLNRYQLWLTVPLAYLQAYGQTLTLERTINPNNDPTLSLFRTPFDLGANF
LPTFTVLTTMVAGTMLLIWLGEQINERGIGNGISIIIFGGIVSRLPGLIIQGFQISQAGDFSTILGLIGFVAIALLTIVG
IVLVQEGQRRIRVQYARRVRGNKVYGGQSSFIPLKVNSAGMIPLIFAQSIIIFPGIVASWFYRPGAEGIGNAIAGFFYNT
FNPTGQGGGIVYMTLLFLLTVGFTYFYTVVIFTQQDLAENLQRNGGFIPGIRPGKKTEEYLMKVLNRITLAGALFLGLIA
VLPFLTQSITGVQIGLGSTALLIVVGVAVDTMRQLEAQLIMRDYEGFLTR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=440, Percent_Identity=40.6818181818182, Blast_Score=275, Evalue=4e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 49496; Mature: 49496

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQAVLRAIQLPDLRRRILFTLGMLFLFRLIAHIPVPNINPTTLEQLRQALATNQLAQLL
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
NLFAGGALENFSVAAMGVYPYITAQIIIQLLQPLIPALQELQKEGEQGRLRLNRYQLWLT
HHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHH
VPLAYLQAYGQTLTLERTINPNNDPTLSLFRTPFDLGANFLPTFTVLTTMVAGTMLLIWL
HHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHH
GEQINERGIGNGISIIIFGGIVSRLPGLIIQGFQISQAGDFSTILGLIGFVAIALLTIVG
HHHHHCCCCCCCCEEEEEHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IVLVQEGQRRIRVQYARRVRGNKVYGGQSSFIPLKVNSAGMIPLIFAQSIIIFPGIVASW
HHHHHCCHHHHHHHHHHHHCCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
FYRPGAEGIGNAIAGFFYNTFNPTGQGGGIVYMTLLFLLTVGFTYFYTVVIFTQQDLAEN
HCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQRNGGFIPGIRPGKKTEEYLMKVLNRITLAGALFLGLIAVLPFLTQSITGVQIGLGSTA
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHH
LLIVVGVAVDTMRQLEAQLIMRDYEGFLTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLQAVLRAIQLPDLRRRILFTLGMLFLFRLIAHIPVPNINPTTLEQLRQALATNQLAQLL
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
NLFAGGALENFSVAAMGVYPYITAQIIIQLLQPLIPALQELQKEGEQGRLRLNRYQLWLT
HHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHH
VPLAYLQAYGQTLTLERTINPNNDPTLSLFRTPFDLGANFLPTFTVLTTMVAGTMLLIWL
HHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHH
GEQINERGIGNGISIIIFGGIVSRLPGLIIQGFQISQAGDFSTILGLIGFVAIALLTIVG
HHHHHCCCCCCCCEEEEEHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IVLVQEGQRRIRVQYARRVRGNKVYGGQSSFIPLKVNSAGMIPLIFAQSIIIFPGIVASW
HHHHHCCHHHHHHHHHHHHCCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
FYRPGAEGIGNAIAGFFYNTFNPTGQGGGIVYMTLLFLLTVGFTYFYTVVIFTQQDLAEN
HCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQRNGGFIPGIRPGKKTEEYLMKVLNRITLAGALFLGLIAVLPFLTQSITGVQIGLGSTA
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHH
LLIVVGVAVDTMRQLEAQLIMRDYEGFLTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9350347; 12788972 [H]