| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is 222525655
Identifier: 222525655
GI number: 222525655
Start: 3032617
End: 3034236
Strand: Direct
Name: 222525655
Synonym: Chy400_2406
Alternate gene names: NA
Gene position: 3032617-3034236 (Clockwise)
Preceding gene: 222525654
Following gene: 222525656
Centisome position: 57.56
GC content: 56.6
Gene sequence:
>1620_bases ATGGCTGTAACGGATACGAGCAATGATATTCAGCTCTTGTTAGCAACGCTGCCGCCGGCGATTAGCGAGGCGATTCGGAA GGCAAATGATCAGGATAATTTGCTCGAAATTGTGATGGATTTGGGACGCCTGCCAGAAGCCCGGTATCGCGGTCACGAGC TGTTCCTGAGTGATCGTGAAGTGACGTCCGAAGACATCCAATATGTGATCGAGCGTATTGGTGAATTTGGTGAAGATAAT CGCGCAGGTATTCCGCGTACTCTGCACCGCATCTCTGGGATTCGCAACCGCCGTGGGGTGGTGATTGGTCTGACCTGCCG CGTTGGGCGGGCGGTGTATGGGACGGTTGATATTATTCGTGATCTGGTCGAGACCGGTCAGAGTATTCTGCTGTTAGGGA AACCGGGTACCGGCAAGACAACCCTGTTACGCGAGACGGCGCGTGTCCTGGGTGATGAACTGCGGAAGCGGGTAGTGATT GTGGATACCTCAAATGAGATTGCCGGTGATGGTGATATTCCCCATCCCGGTATTGGGCGGGCCCGCCGGATGCAGGTGCC ACGACCTGCCGAACAGCATAACGTGATGATCGAGGCGGTCGAAAACCACATGCCGGAAGTGATCGTCATTGATGAGATCG GTACTGAGCTGGAGGCGGCAGCAGCCCGTACTATCGCTGAGCGCGGCGTTCAGTTGGTCGGGACAGCGCACGGGAATACA CTTGATAATCTTATGGTCAATCCAACGCTGTCCGACCTGGTCGGTGGTATTCAGGCAGTGACCCTGGGTGATGAAGAGGC CCGGCGCCGTGGCACGCAGAAGACGGTGTTAGAGCGGAAGGCGCCACCGACCTTCAGCATTCTGGTTGAGATTCAGTCCT GGGATAGGGTGATGGTCTATCCCGATGTTGCGGCAGCCGTCGATGCGATTTTGCGCGGTGAAGACCCTCCCTGCGAACAG CGCTTCCGTGATGCAAACGGTGTGGTCCACCGGGAACCGGTGCGACGGGCGCCAATTGATGCCCCGGCATTTGGTCTGCG GCGCGGTCGTGGTGGCCGTGAACAAGGCCAGATGGGTGGTAGCGGTCCCCGCTTACGTGATCGCAATGGCTCCGCTTCCT CCACACTAACAATGCCACCACAGCGCATCTTTCCATTCGGCGTCAGTCGTAACCGGTTGCAAAGCGCGATTGAACGCCTG CGAGTGCCGGCGGTGATTGTACGTGATTTGAAAGAGGCTACTCTGGTCATGACGCTGAAAAACTACTACCGGCAAAGTTC GCAACAGTTGCGGCAGGCGGAAGAGCAGGGTGTGCCGGTCTATGTGTTGCGCAATAATACGATTACCCAGATGGAACGAC AGCTCGCCCAGGTCTTCCAGTTACGCGAGCTGGTTGACGATGAACCAGCGCCCTTTGGCAACGATTCGGTGGTTGAAGAG GCGTTGCTGGAAACGGAGCAGGCGATTACGCAGGTGATTAATGGCGAGCGGAACGCAGTAGAGTTAACGCCGCGCAGCAG CTATATTCGTCGCTTGCAACATCAGATGGCTGATCGGTATAATCTGCGCTCGGAGAGTCGGGGTGATGATCCTAACCGAC GGGTGAAGATCTTCCGGTAG
Upstream 100 bases:
>100_bases AGCGGTACTGGCACCATCGCTAGAGGTTGGGTTGGAGCCGAGAGTGTCAGTGCGTCGGTATGTGTTGCCACCAACTGCAC GGGAGGAGTGCTAAGCAGGT
Downstream 100 bases:
>100_bases CAGATCGACAGATTGCTGAAGATCGGCTATCCTTAACGAAGGTTAAACCGTCATTGCTGGTAGCGATTTCATGAAACAAG GGTTCTTTATCACATTTGAA
Product: single-stranded nucleic acid binding R3H domain-containing protein
Products: NA
Alternate protein names: AAA ATPase; R3H Domain Protein; ATPase; R3H Domain-Containing Protein; AAA ATPase Superfamily Protein; ATPase-Like Protein; AAA ATPase Central Domain Protein; Sporulation Stage III Protein AA; ATPase Like Protein
Number of amino acids: Translated: 539; Mature: 538
Protein sequence:
>539_residues MAVTDTSNDIQLLLATLPPAISEAIRKANDQDNLLEIVMDLGRLPEARYRGHELFLSDREVTSEDIQYVIERIGEFGEDN RAGIPRTLHRISGIRNRRGVVIGLTCRVGRAVYGTVDIIRDLVETGQSILLLGKPGTGKTTLLRETARVLGDELRKRVVI VDTSNEIAGDGDIPHPGIGRARRMQVPRPAEQHNVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLVGTAHGNT LDNLMVNPTLSDLVGGIQAVTLGDEEARRRGTQKTVLERKAPPTFSILVEIQSWDRVMVYPDVAAAVDAILRGEDPPCEQ RFRDANGVVHREPVRRAPIDAPAFGLRRGRGGREQGQMGGSGPRLRDRNGSASSTLTMPPQRIFPFGVSRNRLQSAIERL RVPAVIVRDLKEATLVMTLKNYYRQSSQQLRQAEEQGVPVYVLRNNTITQMERQLAQVFQLRELVDDEPAPFGNDSVVEE ALLETEQAITQVINGERNAVELTPRSSYIRRLQHQMADRYNLRSESRGDDPNRRVKIFR
Sequences:
>Translated_539_residues MAVTDTSNDIQLLLATLPPAISEAIRKANDQDNLLEIVMDLGRLPEARYRGHELFLSDREVTSEDIQYVIERIGEFGEDN RAGIPRTLHRISGIRNRRGVVIGLTCRVGRAVYGTVDIIRDLVETGQSILLLGKPGTGKTTLLRETARVLGDELRKRVVI VDTSNEIAGDGDIPHPGIGRARRMQVPRPAEQHNVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLVGTAHGNT LDNLMVNPTLSDLVGGIQAVTLGDEEARRRGTQKTVLERKAPPTFSILVEIQSWDRVMVYPDVAAAVDAILRGEDPPCEQ RFRDANGVVHREPVRRAPIDAPAFGLRRGRGGREQGQMGGSGPRLRDRNGSASSTLTMPPQRIFPFGVSRNRLQSAIERL RVPAVIVRDLKEATLVMTLKNYYRQSSQQLRQAEEQGVPVYVLRNNTITQMERQLAQVFQLRELVDDEPAPFGNDSVVEE ALLETEQAITQVINGERNAVELTPRSSYIRRLQHQMADRYNLRSESRGDDPNRRVKIFR >Mature_538_residues AVTDTSNDIQLLLATLPPAISEAIRKANDQDNLLEIVMDLGRLPEARYRGHELFLSDREVTSEDIQYVIERIGEFGEDNR AGIPRTLHRISGIRNRRGVVIGLTCRVGRAVYGTVDIIRDLVETGQSILLLGKPGTGKTTLLRETARVLGDELRKRVVIV DTSNEIAGDGDIPHPGIGRARRMQVPRPAEQHNVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLVGTAHGNTL DNLMVNPTLSDLVGGIQAVTLGDEEARRRGTQKTVLERKAPPTFSILVEIQSWDRVMVYPDVAAAVDAILRGEDPPCEQR FRDANGVVHREPVRRAPIDAPAFGLRRGRGGREQGQMGGSGPRLRDRNGSASSTLTMPPQRIFPFGVSRNRLQSAIERLR VPAVIVRDLKEATLVMTLKNYYRQSSQQLRQAEEQGVPVYVLRNNTITQMERQLAQVFQLRELVDDEPAPFGNDSVVEEA LLETEQAITQVINGERNAVELTPRSSYIRRLQHQMADRYNLRSESRGDDPNRRVKIFR
Specific function: Unknown
COG id: COG3854
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60090; Mature: 59959
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: PS51061 R3H
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVTDTSNDIQLLLATLPPAISEAIRKANDQDNLLEIVMDLGRLPEARYRGHELFLSDRE CCCCCCCCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCEEEECCCC VTSEDIQYVIERIGEFGEDNRAGIPRTLHRISGIRNRRGVVIGLTCRVGRAVYGTVDIIR CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH DLVETGQSILLLGKPGTGKTTLLRETARVLGDELRKRVVIVDTSNEIAGDGDIPHPGIGR HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCC ARRMQVPRPAEQHNVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLVGTAHGNT HHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCC LDNLMVNPTLSDLVGGIQAVTLGDEEARRRGTQKTVLERKAPPTFSILVEIQSWDRVMVY HHHEEECCCHHHHHCCCEEEEECCHHHHHCCCHHHHHHCCCCCCEEEEEEEECCCEEEEC PDVAAAVDAILRGEDPPCEQRFRDANGVVHREPVRRAPIDAPAFGLRRGRGGREQGQMGG CCHHHHHHHHHCCCCCCHHHHHHHCCCCEECCCHHCCCCCCCCHHHHCCCCCCCCCCCCC SGPRLRDRNGSASSTLTMPPQRIFPFGVSRNRLQSAIERLRVPAVIVRDLKEATLVMTLK CCCCCCCCCCCCCCEEECCHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH NYYRQSSQQLRQAEEQGVPVYVLRNNTITQMERQLAQVFQLRELVDDEPAPFGNDSVVEE HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH ALLETEQAITQVINGERNAVELTPRSSYIRRLQHQMADRYNLRSESRGDDPNRRVKIFR HHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECC >Mature Secondary Structure AVTDTSNDIQLLLATLPPAISEAIRKANDQDNLLEIVMDLGRLPEARYRGHELFLSDRE CCCCCCCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCEEEECCCC VTSEDIQYVIERIGEFGEDNRAGIPRTLHRISGIRNRRGVVIGLTCRVGRAVYGTVDIIR CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH DLVETGQSILLLGKPGTGKTTLLRETARVLGDELRKRVVIVDTSNEIAGDGDIPHPGIGR HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCC ARRMQVPRPAEQHNVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLVGTAHGNT HHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCC LDNLMVNPTLSDLVGGIQAVTLGDEEARRRGTQKTVLERKAPPTFSILVEIQSWDRVMVY HHHEEECCCHHHHHCCCEEEEECCHHHHHCCCHHHHHHCCCCCCEEEEEEEECCCEEEEC PDVAAAVDAILRGEDPPCEQRFRDANGVVHREPVRRAPIDAPAFGLRRGRGGREQGQMGG CCHHHHHHHHHCCCCCCHHHHHHHCCCCEECCCHHCCCCCCCCHHHHCCCCCCCCCCCCC SGPRLRDRNGSASSTLTMPPQRIFPFGVSRNRLQSAIERLRVPAVIVRDLKEATLVMTLK CCCCCCCCCCCCCCEEECCHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH NYYRQSSQQLRQAEEQGVPVYVLRNNTITQMERQLAQVFQLRELVDDEPAPFGNDSVVEE HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH ALLETEQAITQVINGERNAVELTPRSSYIRRLQHQMADRYNLRSESRGDDPNRRVKIFR HHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA