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The map label for this gene is rfbB [H]

Identifier: 222525523

GI number: 222525523

Start: 2874778

End: 2876046

Strand: Direct

Name: rfbB [H]

Synonym: Chy400_2272

Alternate gene names: 222525523

Gene position: 2874778-2876046 (Clockwise)

Preceding gene: 222525522

Following gene: 222525524

Centisome position: 54.56

GC content: 56.11

Gene sequence:

>1269_bases
ATGCACTACGCAATTCGGGCCCGTGATTTAGCAAAACAGTATCGGATCGGTGCGATCAGGCAGCGTGATATGGGATACGT
CACGCTACGCGATGCCATTGCCGAGCGTCTGCGTGGTCGCACGCAGAAAGCGACGACGACCGAGCTGTGGGCACTCAACG
GTGTTTCGTTTGATGTTCAGCAAGGGGAAGTGGTTGGGATCATCGGGCGTAATGGTGCCGGGAAGAGCACCCTGCTGAAA
GTGCTCTCGCGCATTACCGAACCAACCCGGGGCAGAGCCGAATTGTACGGTCGGGTGGCTTCTTTGCTCGAAGTTGGCAC
CGGTTTTCATCCCGAATTGACCGGGCGCGAGAATATTTATCTCAACGGTGCCATTTTGGGCATGCGCAAACGCGAAATTG
ATCGCAATTTTGACGCAATTGTCCAGTTTGCCGAGGTAGAGAAGTTTATCGATACGCCGGTGAAGTTTTATTCATCGGGC
ATGTATGTGCGGCTGGCCTTCGCAGTTGCCGCGCATCTCGAGCCGGAAATTCTGATTGTCGATGAGGTACTGGCCGTCGG
CGATGCGCGCTTTCAGAAAAAGTGTCTCAACAAGATGCAAGATGTAGGTCAGCAGGGGCGTACCGTCCTGTTTGTCTCGC
ACAGCATGCAATCCATCCTGCGCATGTGTCAGCGGGCCATTCTGCTCAATCAGGGGCAGGTGGTGGCCGATGGACCGGCA
CAGCAGGTGGTTGGTGTCTATCTGGGGAAGGGCACACATTCGATTGCGGAACGGGTCTGGCCGGATCGGGCGAGTGCGCC
GGGCAAGGAAATTGCCCACCTGCGGGCAGTGCGTGTTCGCGATGTTGATGGCGATGTCTCGGACACGATTGATATTCGGA
CACCGGTAACGCTTGAGATGGAGTTTGTGGTAACAACCGGTGGCTATGTATTGATGCCGCACTTTCGTCTCTACAACGAA
GATAATATCGCCGTGTTTACCACCCTCGATCTTGACCCCGAATGGCGGCGGCGGCCACGACTGCCGGGTCGCTATGTCTC
CAGGGTGACCATTCCCGGCAATTTTCTGGCTGAGGGGTCACTGTACGTCGAAGCAGCGCTGACCACTCTCGATCCGCCGA
TTGGTCAATTCGCCGAACGTGATGCGGTTGCTTTTCAGGTGATTGATAGTCTGGAAGGTGACTCAGCACGTGGTGATTGG
GCCGGCAATCTTTCCGGGGTGGTGCGACCACTCTTACCGTGGACGACGATCTATGAGCCGTCAGCCTGA

Upstream 100 bases:

>100_bases
CTTGATGCTGATCTCGGTCATGATGGCAGTAACAATATTCAGTTCCGGTTTGTTCTACTTTCAGGCGGTGGAACGTAAGT
TTGCCGATATTATCTAGCCT

Downstream 100 bases:

>100_bases
ACCTATGGGTCACCACTATGCTTTGCGTCGCTATGGTGTCGCGTTGCTCTTACCAACCATCCTGCTCGTCGGGATGGTGA
CTTTGTACCCCTTTGCTTTC

Product: ABC transporter-like protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MHYAIRARDLAKQYRIGAIRQRDMGYVTLRDAIAERLRGRTQKATTTELWALNGVSFDVQQGEVVGIIGRNGAGKSTLLK
VLSRITEPTRGRAELYGRVASLLEVGTGFHPELTGRENIYLNGAILGMRKREIDRNFDAIVQFAEVEKFIDTPVKFYSSG
MYVRLAFAVAAHLEPEILIVDEVLAVGDARFQKKCLNKMQDVGQQGRTVLFVSHSMQSILRMCQRAILLNQGQVVADGPA
QQVVGVYLGKGTHSIAERVWPDRASAPGKEIAHLRAVRVRDVDGDVSDTIDIRTPVTLEMEFVVTTGGYVLMPHFRLYNE
DNIAVFTTLDLDPEWRRRPRLPGRYVSRVTIPGNFLAEGSLYVEAALTTLDPPIGQFAERDAVAFQVIDSLEGDSARGDW
AGNLSGVVRPLLPWTTIYEPSA

Sequences:

>Translated_422_residues
MHYAIRARDLAKQYRIGAIRQRDMGYVTLRDAIAERLRGRTQKATTTELWALNGVSFDVQQGEVVGIIGRNGAGKSTLLK
VLSRITEPTRGRAELYGRVASLLEVGTGFHPELTGRENIYLNGAILGMRKREIDRNFDAIVQFAEVEKFIDTPVKFYSSG
MYVRLAFAVAAHLEPEILIVDEVLAVGDARFQKKCLNKMQDVGQQGRTVLFVSHSMQSILRMCQRAILLNQGQVVADGPA
QQVVGVYLGKGTHSIAERVWPDRASAPGKEIAHLRAVRVRDVDGDVSDTIDIRTPVTLEMEFVVTTGGYVLMPHFRLYNE
DNIAVFTTLDLDPEWRRRPRLPGRYVSRVTIPGNFLAEGSLYVEAALTTLDPPIGQFAERDAVAFQVIDSLEGDSARGDW
AGNLSGVVRPLLPWTTIYEPSA
>Mature_422_residues
MHYAIRARDLAKQYRIGAIRQRDMGYVTLRDAIAERLRGRTQKATTTELWALNGVSFDVQQGEVVGIIGRNGAGKSTLLK
VLSRITEPTRGRAELYGRVASLLEVGTGFHPELTGRENIYLNGAILGMRKREIDRNFDAIVQFAEVEKFIDTPVKFYSSG
MYVRLAFAVAAHLEPEILIVDEVLAVGDARFQKKCLNKMQDVGQQGRTVLFVSHSMQSILRMCQRAILLNQGQVVADGPA
QQVVGVYLGKGTHSIAERVWPDRASAPGKEIAHLRAVRVRDVDGDVSDTIDIRTPVTLEMEFVVTTGGYVLMPHFRLYNE
DNIAVFTTLDLDPEWRRRPRLPGRYVSRVTIPGNFLAEGSLYVEAALTTLDPPIGQFAERDAVAFQVIDSLEGDSARGDW
AGNLSGVVRPLLPWTTIYEPSA

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=236, Percent_Identity=27.9661016949153, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI153792144, Length=207, Percent_Identity=28.5024154589372, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI27436953, Length=199, Percent_Identity=28.643216080402, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI150417984, Length=264, Percent_Identity=25.7575757575758, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI105990541, Length=219, Percent_Identity=27.8538812785388, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI47078218, Length=204, Percent_Identity=28.4313725490196, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI45446740, Length=204, Percent_Identity=28.4313725490196, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI6005701, Length=201, Percent_Identity=27.363184079602, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI116734710, Length=208, Percent_Identity=27.8846153846154, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI27881501, Length=224, Percent_Identity=24.1071428571429, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI30795238, Length=224, Percent_Identity=24.1071428571429, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI31657092, Length=208, Percent_Identity=27.4038461538462, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI27262624, Length=210, Percent_Identity=24.7619047619048, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI27262626, Length=210, Percent_Identity=24.7619047619048, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI21536376, Length=204, Percent_Identity=26.9607843137255, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI73747915, Length=221, Percent_Identity=28.5067873303167, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI42741659, Length=220, Percent_Identity=26.3636363636364, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI48994943, Length=205, Percent_Identity=27.3170731707317, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788210, Length=267, Percent_Identity=29.2134831460674, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787758, Length=267, Percent_Identity=26.9662921348315, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787029, Length=211, Percent_Identity=29.3838862559242, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788761, Length=219, Percent_Identity=26.9406392694064, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789032, Length=207, Percent_Identity=26.0869565217391, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786398, Length=214, Percent_Identity=25.7009345794392, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788225, Length=212, Percent_Identity=28.7735849056604, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081791, Length=238, Percent_Identity=23.9495798319328, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=27.6497695852535, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081709, Length=203, Percent_Identity=23.1527093596059, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI48995001, Length=228, Percent_Identity=25, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786319, Length=198, Percent_Identity=23.7373737373737, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1790525, Length=213, Percent_Identity=28.169014084507, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081782, Length=202, Percent_Identity=24.7524752475248, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1789672, Length=205, Percent_Identity=27.8048780487805, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787089, Length=209, Percent_Identity=24.8803827751196, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1790190, Length=212, Percent_Identity=27.3584905660377, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1786981, Length=194, Percent_Identity=30.9278350515464, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790467, Length=214, Percent_Identity=23.8317757009346, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788450, Length=223, Percent_Identity=25.1121076233184, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788897, Length=206, Percent_Identity=25.2427184466019, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789873, Length=200, Percent_Identity=28.5, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082267, Length=237, Percent_Identity=23.2067510548523, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786703, Length=204, Percent_Identity=27.4509803921569, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787712, Length=201, Percent_Identity=27.363184079602, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786803, Length=230, Percent_Identity=24.7826086956522, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787370, Length=200, Percent_Identity=22.5, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787105, Length=226, Percent_Identity=23.8938053097345, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=224, Percent_Identity=27.6785714285714, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17565586, Length=208, Percent_Identity=25, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=216, Percent_Identity=26.3888888888889, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=216, Percent_Identity=26.3888888888889, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71983523, Length=216, Percent_Identity=26.3888888888889, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=26.3888888888889, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=203, Percent_Identity=25.1231527093596, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=214, Percent_Identity=27.5700934579439, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007184, Length=234, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI221500365, Length=234, Percent_Identity=27.7777777777778, Blast_Score=85, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24666092, Length=259, Percent_Identity=25.8687258687259, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI221512771, Length=202, Percent_Identity=25.7425742574257, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643674, Length=208, Percent_Identity=25.4807692307692, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161077321, Length=210, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 46883; Mature: 46883

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS00107 PROTEIN_KINASE_ATP ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYAIRARDLAKQYRIGAIRQRDMGYVTLRDAIAERLRGRTQKATTTELWALNGVSFDVQ
CCCEEHHHHHHHHHHHCCEEECCCCEEEHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEC
QGEVVGIIGRNGAGKSTLLKVLSRITEPTRGRAELYGRVASLLEVGTGFHPELTGRENIY
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
LNGAILGMRKREIDRNFDAIVQFAEVEKFIDTPVKFYSSGMYVRLAFAVAAHLEPEILIV
EEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEHHHHHCCCCEEEE
DEVLAVGDARFQKKCLNKMQDVGQQGRTVLFVSHSMQSILRMCQRAILLNQGQVVADGPA
EHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCH
QQVVGVYLGKGTHSIAERVWPDRASAPGKEIAHLRAVRVRDVDGDVSDTIDIRTPVTLEM
HHHHHHEECCCHHHHHHHHCCCCCCCCHHHHHHHHEEEEECCCCCCCCEEEECCCEEEEE
EFVVTTGGYVLMPHFRLYNEDNIAVFTTLDLDPEWRRRPRLPGRYVSRVTIPGNFLAEGS
EEEEECCCEEEECEEEEECCCCEEEEEEECCCHHHHHCCCCCCHHEEEEECCCCEEECCC
LYVEAALTTLDPPIGQFAERDAVAFQVIDSLEGDSARGDWAGNLSGVVRPLLPWTTIYEP
EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
SA
CC
>Mature Secondary Structure
MHYAIRARDLAKQYRIGAIRQRDMGYVTLRDAIAERLRGRTQKATTTELWALNGVSFDVQ
CCCEEHHHHHHHHHHHCCEEECCCCEEEHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEC
QGEVVGIIGRNGAGKSTLLKVLSRITEPTRGRAELYGRVASLLEVGTGFHPELTGRENIY
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
LNGAILGMRKREIDRNFDAIVQFAEVEKFIDTPVKFYSSGMYVRLAFAVAAHLEPEILIV
EEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEHHHHHCCCCEEEE
DEVLAVGDARFQKKCLNKMQDVGQQGRTVLFVSHSMQSILRMCQRAILLNQGQVVADGPA
EHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCH
QQVVGVYLGKGTHSIAERVWPDRASAPGKEIAHLRAVRVRDVDGDVSDTIDIRTPVTLEM
HHHHHHEECCCHHHHHHHHCCCCCCCCHHHHHHHHEEEEECCCCCCCCEEEECCCEEEEE
EFVVTTGGYVLMPHFRLYNEDNIAVFTTLDLDPEWRRRPRLPGRYVSRVTIPGNFLAEGS
EEEEECCCEEEECEEEEECCCCEEEEEEECCCHHHHHCCCCCCHHEEEEECCCCEEECCC
LYVEAALTTLDPPIGQFAERDAVAFQVIDSLEGDSARGDWAGNLSGVVRPLLPWTTIYEP
EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
SA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]