Click here to switch to the map view.

The map label for this gene is sigK [H]

Identifier: 222525271

GI number: 222525271

Start: 2547036

End: 2547629

Strand: Direct

Name: sigK [H]

Synonym: Chy400_2011

Alternate gene names: 222525271

Gene position: 2547036-2547629 (Clockwise)

Preceding gene: 222525270

Following gene: 222525272

Centisome position: 48.34

GC content: 53.7

Gene sequence:

>594_bases
ATGCCATCGCAACCACCTGAAGATACTGGTCTCCGTGGTCTGACCGATGAATTGCTCATCGACTTGATTGTTCAGCGTGA
AGAAGCTGCACTCGGCGAGCTATATGATCGGTACGCTTCATTAGTATACGCGATTGCGCTGCGTATCACCGGTGATCGGC
AGACGGCCGAAGAGGTTATGCAAGACGTTTTTCAGAATATCTGGCAGACGGCAGGTGGCTTTCGTCGCCAGGCCGGTGCC
GTGGCGGGTTGGATTATTGGTATCAGCCGCCATCGGGCAATCGACGCGCTCCGCAGTAAACGTGAACGAGGGCGCAGCCG
TGAATTGACCGGCATTGATGCTACACCTCATCCTTCAACATCCTCAGACATTGAACACGATGTTGAGCAACGCATCTTGC
GTGAAGCAGTGCGCGCAGCCCTGGCTGACCTGCCATCACCACAGCGCCAGGCAATTGAGATGGCATATTACGGTGGTTTG
ACGCAAGCAGAGATTGCCGAGCGACTTGGTGAACCACTTGGTACTATCAAAACACGATTGCGACTTGGTTTGACAAAATT
GCGTGAACTGTTGCGAATGCTGGCGGAGTCGTAG

Upstream 100 bases:

>100_bases
GAGGGGAACAACTGTGGGTGGGCAATCATTACTTGTGCCGGTCAATTCAGCTATAATACAGTATCGCCATAGCTCTACTG
AACAGAGGGTCTCGTATTCA

Downstream 100 bases:

>100_bases
CATGGAACCTTCATCGGAACGATCTGACGATATAACCGAGTTGCTGGCGGCTTACGCACTCGATGCGCTCGAACCGGCAG
AGCGCGAACGGGTGCAACGT

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MPSQPPEDTGLRGLTDELLIDLIVQREEAALGELYDRYASLVYAIALRITGDRQTAEEVMQDVFQNIWQTAGGFRRQAGA
VAGWIIGISRHRAIDALRSKRERGRSRELTGIDATPHPSTSSDIEHDVEQRILREAVRAALADLPSPQRQAIEMAYYGGL
TQAEIAERLGEPLGTIKTRLRLGLTKLRELLRMLAES

Sequences:

>Translated_197_residues
MPSQPPEDTGLRGLTDELLIDLIVQREEAALGELYDRYASLVYAIALRITGDRQTAEEVMQDVFQNIWQTAGGFRRQAGA
VAGWIIGISRHRAIDALRSKRERGRSRELTGIDATPHPSTSSDIEHDVEQRILREAVRAALADLPSPQRQAIEMAYYGGL
TQAEIAERLGEPLGTIKTRLRLGLTKLRELLRMLAES
>Mature_196_residues
PSQPPEDTGLRGLTDELLIDLIVQREEAALGELYDRYASLVYAIALRITGDRQTAEEVMQDVFQNIWQTAGGFRRQAGAV
AGWIIGISRHRAIDALRSKRERGRSRELTGIDATPHPSTSSDIEHDVEQRILREAVRAALADLPSPQRQAIEMAYYGGLT
QAEIAERLGEPLGTIKTRLRLGLTKLRELLRMLAES

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21972; Mature: 21841

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSQPPEDTGLRGLTDELLIDLIVQREEAALGELYDRYASLVYAIALRITGDRQTAEEVM
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QDVFQNIWQTAGGFRRQAGAVAGWIIGISRHRAIDALRSKRERGRSRELTGIDATPHPST
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
SSDIEHDVEQRILREAVRAALADLPSPQRQAIEMAYYGGLTQAEIAERLGEPLGTIKTRL
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHH
RLGLTKLRELLRMLAES
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PSQPPEDTGLRGLTDELLIDLIVQREEAALGELYDRYASLVYAIALRITGDRQTAEEVM
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QDVFQNIWQTAGGFRRQAGAVAGWIIGISRHRAIDALRSKRERGRSRELTGIDATPHPST
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
SSDIEHDVEQRILREAVRAALADLPSPQRQAIEMAYYGGLTQAEIAERLGEPLGTIKTRL
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHH
RLGLTKLRELLRMLAES
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]