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The map label for this gene is rbpA [H]

Identifier: 222525267

GI number: 222525267

Start: 2543611

End: 2543913

Strand: Direct

Name: rbpA [H]

Synonym: Chy400_2007

Alternate gene names: 222525267

Gene position: 2543611-2543913 (Clockwise)

Preceding gene: 222525266

Following gene: 222525268

Centisome position: 48.28

GC content: 56.11

Gene sequence:

>303_bases
ATGTACGTGAAGCTTTTTGTCGGTAATTTGGCCTGGAGCGTTGATGATGCAACGCTAGAGGCCTTCTTTCAGGACTACGG
CGATGTACGTAGCGCACGGGTGATTAACGATCGCGAGACTGGTCGTTCACGTGGATTCGGCTTTGTCGAAATGGAAGTCG
CTGATGTAGCGACTGTGATCAGCCAGACGAACGGTCGTCCGATCAACGGGCGTGAAATTCGAGTCAATGAAGCCGAGGAC
AAGGGTTCCCGCGGCCCTCGTTCCGGCGGTGATCGCGGCGGCTTCGGCGGTCGGCGTTACTAA

Upstream 100 bases:

>100_bases
GAGGCGAAGCGTCCGGTGTTTGTTTCGGAGGCGTGGTTTGTGGGCATTAGCCCCGTGAGTGACTGCGTTGATCAACCAAC
GCGGAGGGAGTGGGACCGGA

Downstream 100 bases:

>100_bases
CGCTTCCCTTCGAGCCGGTCGCGCCTCAACTGGCTCGTGTGCGGGATCCTCTGCCCCCTGTCATTGACAGGGGGTATGTT
GTGTCAGGATATAGATTATG

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 100

Protein sequence:

>100_residues
MYVKLFVGNLAWSVDDATLEAFFQDYGDVRSARVINDRETGRSRGFGFVEMEVADVATVISQTNGRPINGREIRVNEAED
KGSRGPRSGGDRGGFGGRRY

Sequences:

>Translated_100_residues
MYVKLFVGNLAWSVDDATLEAFFQDYGDVRSARVINDRETGRSRGFGFVEMEVADVATVISQTNGRPINGREIRVNEAED
KGSRGPRSGGDRGGFGGRRY
>Mature_100_residues
MYVKLFVGNLAWSVDDATLEAFFQDYGDVRSARVINDRETGRSRGFGFVEMEVADVATVISQTNGRPINGREIRVNEAED
KGSRGPRSGGDRGGFGGRRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=90, Percent_Identity=44.4444444444444, Blast_Score=74, Evalue=2e-14,
Organism=Homo sapiens, GI34577105, Length=77, Percent_Identity=41.5584415584416, Blast_Score=65, Evalue=8e-12,
Organism=Homo sapiens, GI5803137, Length=83, Percent_Identity=43.3734939759036, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI34577107, Length=77, Percent_Identity=41.5584415584416, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI221139802, Length=77, Percent_Identity=41.5584415584416, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI212648574, Length=78, Percent_Identity=41.025641025641, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569937, Length=78, Percent_Identity=41.025641025641, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=38.961038961039, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=90, Percent_Identity=40, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11035; Mature: 11035

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVKLFVGNLAWSVDDATLEAFFQDYGDVRSARVINDRETGRSRGFGFVEMEVADVATVI
CEEEEEECCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHH
SQTNGRPINGREIRVNEAEDKGSRGPRSGGDRGGFGGRRY
HCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYVKLFVGNLAWSVDDATLEAFFQDYGDVRSARVINDRETGRSRGFGFVEMEVADVATVI
CEEEEEECCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHH
SQTNGRPINGREIRVNEAEDKGSRGPRSGGDRGGFGGRRY
HCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]