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The map label for this gene is 222525254

Identifier: 222525254

GI number: 222525254

Start: 2528962

End: 2529534

Strand: Reverse

Name: 222525254

Synonym: Chy400_1994

Alternate gene names: NA

Gene position: 2529534-2528962 (Counterclockwise)

Preceding gene: 222525255

Following gene: 222525253

Centisome position: 48.01

GC content: 51.13

Gene sequence:

>573_bases
ATGGCAAAGCGCCACAAAGGTAAAATCGTTGTCTGGAAAGACGATAAAGGGTATGGATTTATTGAGTCTGCCAATGGTCG
CGATAGAGTCTTCTTTCATATCCGTCATCTCGCTGATCGGCAACGGCGTCCAGAACTCAATACTTCCGTTACCTATGCCC
TTGGCAACGACGACAAGGGCAGAGTGCAGGCTATCGATGTCCGCTTCGGTAATGAGCCGGTTTCATTCGTTGTGGTTACC
TTGCTGGTAAGTGGTAGTTTCTTCGCTGCCCTGGCTCTCATCACCTTCATCGGTGGTATCTCGCCACTGCTACTGATTCT
GTATGCACTTTTCAGCAGTATCACCTTCATCGCCTATGAGTTCGACAAAATCAACGCCCGCCAGGGCCGACGCCGCATCT
CCGAACGCAGTCTGCACCTGCTTGAACTGCTCGGTGGCTGGCCCGGCGCACTGGTTGCGCAGTGGTATCTTTCGCACAAG
AATCGAAAGGCGTCGTATCAACGGGTATTCTGGCTGGTAGTATTTGTCAATCTGGGTGTTTTGTTCTGGTATTGCTATCA
GGTGCTCACATGA

Upstream 100 bases:

>100_bases
AGGATACATAACGGTACGCATACTCACTATACTGGATAAAAACTGGTTCCTTGCTTTCCCACAACCGGGAAGCATCGGCG
ACAACGCAGAGGTTTTCGTC

Downstream 100 bases:

>100_bases
CACACACTGAACGGTGATACCAGGACACGCAATAAGACAACGCTAACACTCCTCTTATTGCGTGTCCTGGTATTCTGGAG
TAAAATACCTTGTGTGATAC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MAKRHKGKIVVWKDDKGYGFIESANGRDRVFFHIRHLADRQRRPELNTSVTYALGNDDKGRVQAIDVRFGNEPVSFVVVT
LLVSGSFFAALALITFIGGISPLLLILYALFSSITFIAYEFDKINARQGRRRISERSLHLLELLGGWPGALVAQWYLSHK
NRKASYQRVFWLVVFVNLGVLFWYCYQVLT

Sequences:

>Translated_190_residues
MAKRHKGKIVVWKDDKGYGFIESANGRDRVFFHIRHLADRQRRPELNTSVTYALGNDDKGRVQAIDVRFGNEPVSFVVVT
LLVSGSFFAALALITFIGGISPLLLILYALFSSITFIAYEFDKINARQGRRRISERSLHLLELLGGWPGALVAQWYLSHK
NRKASYQRVFWLVVFVNLGVLFWYCYQVLT
>Mature_189_residues
AKRHKGKIVVWKDDKGYGFIESANGRDRVFFHIRHLADRQRRPELNTSVTYALGNDDKGRVQAIDVRFGNEPVSFVVVTL
LVSGSFFAALALITFIGGISPLLLILYALFSSITFIAYEFDKINARQGRRRISERSLHLLELLGGWPGALVAQWYLSHKN
RKASYQRVFWLVVFVNLGVLFWYCYQVLT

Specific function: Unknown

COG id: COG3326

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21787; Mature: 21655

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRHKGKIVVWKDDKGYGFIESANGRDRVFFHIRHLADRQRRPELNTSVTYALGNDDKG
CCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
RVQAIDVRFGNEPVSFVVVTLLVSGSFFAALALITFIGGISPLLLILYALFSSITFIAYE
CEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEE
FDKINARQGRRRISERSLHLLELLGGWPGALVAQWYLSHKNRKASYQRVFWLVVFVNLGV
HHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LFWYCYQVLT
HHHHHHHHHC
>Mature Secondary Structure 
AKRHKGKIVVWKDDKGYGFIESANGRDRVFFHIRHLADRQRRPELNTSVTYALGNDDKG
CCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
RVQAIDVRFGNEPVSFVVVTLLVSGSFFAALALITFIGGISPLLLILYALFSSITFIAYE
CEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEE
FDKINARQGRRRISERSLHLLELLGGWPGALVAQWYLSHKNRKASYQRVFWLVVFVNLGV
HHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LFWYCYQVLT
HHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA