| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is dinG [H]
Identifier: 222525025
GI number: 222525025
Start: 2222802
End: 2225657
Strand: Direct
Name: dinG [H]
Synonym: Chy400_1760
Alternate gene names: 222525025
Gene position: 2222802-2225657 (Clockwise)
Preceding gene: 222525024
Following gene: 222525028
Centisome position: 42.19
GC content: 55.32
Gene sequence:
>2856_bases ATGAATAATCGTATTTACGTTGCTATTGATGTCGAGACCACCGGGTTACAGAGTGGCCTCGATGAAATTATTGAAGTCGC TGCCGTAACCTTCCGCGGGCACGAGATTCTCGACCGTTTCGAGCAACTGGTACGTCCCCGGCAGGCAGTACCGCTCAAGA TTACCCGTCTGACCGGGATCGATCCGGCGGCGCTGGCACAGGCTCCCCGTTTTAATGAGATCGGTGCTGATCTGGCCCGC TTTATCGGGAACCGGCCAATTGTCGGGCACTCGATAGGCTTCGATCTGACGATGTTGCGTGCCCAGGGGATGCAGTTTAA TCAGCCCGTCTACGATACTTTTGAACTGGCTACGCTCCTTTTGCCCCAGGTCAGCAGCTACAAACTCTCGGCACTGGCTG CTCACCTTGGTATTCCCCATCCTGATGCCCATCGTGCGCTCAATGATGCGGAAGTGACGGCACGACTGTTTGCGATGCTG AGCGAGCGGATGCTGCAACTTGACCTGGCGACGTTGAGCGAAATGGTTCGCTTGATGGGCAAAATCGGCACACCGCTACG CGATCTGTTTGAAGAGGCGCTGCGGCAGAAGGCGCGCAATGCTTTTCGCGATCCAATTCTCGCGCAGCAGTCAACTGGTA CAATCAGCGCCGAGCCAACACTGTTCTCGTCTGCACCTGATACTGGTAGTCCTGAGTTACCCCCTCTACGCCCTACCGGC GATACCCGGCCTCTTGATCTTGACCAGATTGCTGATCTTTTCAGCCCGGAAGGCGTGTTTGGCCGAGCGTTTCCCGGCTA CGAACCACGTCCGCCGCAGATCGAGATGGCCCGTGCAGTTGCCACGGCCTTCAATCACAGTGAGCCGTTAATTGTCGAAG CCGGCACCGGTACCGGCAAGAGTATGGCCTATCTGGTACCGGCCACGCTGTATGCAGCACAACGCGGCGAGCGGGTGGTG ATTTCGACCAATACCATCAATCTGCAAGATCAGCTCTACAATAAGGATATTCCCGATTTACAGCGTATCTTTGCCACAGC CGGCCTGCCTACGTTTCGCGCCGCACTTTTGAAAGGTCGCAGCAATTATCTCTGTCTTAAACGCTACCACGAGCTACGTC GGCTTGAGAACCTGACCACCGAGGAAGTGCGGGCGTTGTTGAAGATTCAACTCTGGTTGCCAACCACAACTAGCGGCGAC CGTACCGAACTGCCGCTGGTTGATCGCGAGCAATCGGCCTGGAATCGAGTGAATGTCTCGGTTGAGACCTGCACAGGTGC GCGCTGTCCACATTTCCGCGAATGCTACTTCTTCCGCGCCCGTCGTGCAGCCGAGTCGGCACATCTGGTCGTGGTCAATC ATGCCTTGCTGATCGCTGATCTGGCTGCGGCGTCCCAGGTCTTACCACCCTACGATCATCTTGTCATTGATGAAGCGCAC AACCTCGAAGACGTTGCAACCGATCAGCTCAGCTTCAATCTCGACCAGGCCAGCTTACTCAAGTTTCTCGATGATCTGTT CCAGACCGGTGGTGCGCAGGTCGTGAGTGGTCTGCTCAGTGAATTGCCGGCAGTGCTCAGCGAGATTGGTGGTGGTGGTG CCGCCGGTGAACGAATTACGGCTGCGATTGAGCGGATGCGTCCGTCTTTGATTCGGGCCCGCACGGCAGTGTATGAGTGC TTCAATCTACTCACCCGCTTTGTACAGCTCGATCCCGAATCTGGAGGTCAGTATGATACCCGCCTGCGTCTGACCAAAGG AGTACGCCAGCGTCCAGAATGGCAGGAGATTGAACTGGCCTGGCAGAACTTGAATGATATTCTGGCCTTAATCGGCAATG AATTAGCAGGTATCGAAGTGCAGCTCCGTGAGCTGGAAGAAGCGGCGGGTGGTCTTGACGATTTGTTGTTGCGGACAGAG GTGTTGCGTCGTTTCGCAACCGATGCGCGGGTGCGTAGCGGACATGTGATCTTTGGTGATGATGACAGTATTTGCTGGCT GACCTATGATCGCCAGCGGGATGTGCTAACCCTTACCGCAGCACCGCTTAGTGTTGCCGAGATTTTGCAGAGCCAGCTCT TTGCACAAAAACAGACCAGTATCCTCGCGTCGGCGACATTGAGCATTGCCGGCACCTTCGATTTTGTGAAGAGTCGGATC GGGCTGGAAGATTGTCAGGAACTCATGCTCGATTCGCCGTTTGACTACGCCCAGCAGGCATTGGTCTACATCCCCAACGA CATTCCCGAACCGAATCAGCGTGGCTATCAGCCAATGATCGAGCAGGCAATCATCGATCTGGCAATTGCGTCGGGTGGAC GCATGCTCGCGCTCTTCACCGCCTCAAATGCCTTACGTCAGACCTATACAGCCATTCAAGAAGTTCTGGAAGATCACGGT ATTGGCGTCATGGCACAGGGTATTGATGGTTCGCGCAAAGCACTGGTTGATCGCCTGAAAGAATTTCCGCGTTCGGTGTT GCTCGGCACCAACAGCTTCTGGGAAGGGGTTGATGTCGTCGGTGATGCTCTGTCGGTATTGGTCATTACCAAATTGCCGT TTGCGGTACCGACCGATCCGATTGTAGCCGCACGGAGCGAACTGTTTACCGACCCGTTCAACGAATACAGCGTCCCGCAG AGCATTCTACGCTTCAAACAAGGGTTTGGGCGCCTGATCCGTTCACGTGAGGATAGAGGCATTGTTGTCGTGCTTGATCG CCGGTTACTGACCAAAAAATACGGCCAGCAATTCCTCGACTCACTGCCACCTACGCGAGTACGTACCGGCACCCTGGCGA GTCTCCCCGGCCTGGTTGCACGTTTTTTGCAGAAAGTCAATGGCTCGTCGGGATAG
Upstream 100 bases:
>100_bases GATAACGATTGACCTGACGACGGCATCTCCATAGCCGTATGGTGAGTCATCAGGCTGGATCAGAAGCAGAAAGATGCTGT AACTCGCCGGCAAAGAGAGC
Downstream 100 bases:
>100_bases GATCAGCCGTACACATTCACGCCTGCTAGCACACCTGACAGAAGGGGCGACGCATGTGTCGCCCCTTCTCGCGCCGGTGG CATGCCTGAACGTTGAGCAG
Product: DNA polymerase III subunit epsilon
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 951; Mature: 951
Protein sequence:
>951_residues MNNRIYVAIDVETTGLQSGLDEIIEVAAVTFRGHEILDRFEQLVRPRQAVPLKITRLTGIDPAALAQAPRFNEIGADLAR FIGNRPIVGHSIGFDLTMLRAQGMQFNQPVYDTFELATLLLPQVSSYKLSALAAHLGIPHPDAHRALNDAEVTARLFAML SERMLQLDLATLSEMVRLMGKIGTPLRDLFEEALRQKARNAFRDPILAQQSTGTISAEPTLFSSAPDTGSPELPPLRPTG DTRPLDLDQIADLFSPEGVFGRAFPGYEPRPPQIEMARAVATAFNHSEPLIVEAGTGTGKSMAYLVPATLYAAQRGERVV ISTNTINLQDQLYNKDIPDLQRIFATAGLPTFRAALLKGRSNYLCLKRYHELRRLENLTTEEVRALLKIQLWLPTTTSGD RTELPLVDREQSAWNRVNVSVETCTGARCPHFRECYFFRARRAAESAHLVVVNHALLIADLAAASQVLPPYDHLVIDEAH NLEDVATDQLSFNLDQASLLKFLDDLFQTGGAQVVSGLLSELPAVLSEIGGGGAAGERITAAIERMRPSLIRARTAVYEC FNLLTRFVQLDPESGGQYDTRLRLTKGVRQRPEWQEIELAWQNLNDILALIGNELAGIEVQLRELEEAAGGLDDLLLRTE VLRRFATDARVRSGHVIFGDDDSICWLTYDRQRDVLTLTAAPLSVAEILQSQLFAQKQTSILASATLSIAGTFDFVKSRI GLEDCQELMLDSPFDYAQQALVYIPNDIPEPNQRGYQPMIEQAIIDLAIASGGRMLALFTASNALRQTYTAIQEVLEDHG IGVMAQGIDGSRKALVDRLKEFPRSVLLGTNSFWEGVDVVGDALSVLVITKLPFAVPTDPIVAARSELFTDPFNEYSVPQ SILRFKQGFGRLIRSREDRGIVVVLDRRLLTKKYGQQFLDSLPPTRVRTGTLASLPGLVARFLQKVNGSSG
Sequences:
>Translated_951_residues MNNRIYVAIDVETTGLQSGLDEIIEVAAVTFRGHEILDRFEQLVRPRQAVPLKITRLTGIDPAALAQAPRFNEIGADLAR FIGNRPIVGHSIGFDLTMLRAQGMQFNQPVYDTFELATLLLPQVSSYKLSALAAHLGIPHPDAHRALNDAEVTARLFAML SERMLQLDLATLSEMVRLMGKIGTPLRDLFEEALRQKARNAFRDPILAQQSTGTISAEPTLFSSAPDTGSPELPPLRPTG DTRPLDLDQIADLFSPEGVFGRAFPGYEPRPPQIEMARAVATAFNHSEPLIVEAGTGTGKSMAYLVPATLYAAQRGERVV ISTNTINLQDQLYNKDIPDLQRIFATAGLPTFRAALLKGRSNYLCLKRYHELRRLENLTTEEVRALLKIQLWLPTTTSGD RTELPLVDREQSAWNRVNVSVETCTGARCPHFRECYFFRARRAAESAHLVVVNHALLIADLAAASQVLPPYDHLVIDEAH NLEDVATDQLSFNLDQASLLKFLDDLFQTGGAQVVSGLLSELPAVLSEIGGGGAAGERITAAIERMRPSLIRARTAVYEC FNLLTRFVQLDPESGGQYDTRLRLTKGVRQRPEWQEIELAWQNLNDILALIGNELAGIEVQLRELEEAAGGLDDLLLRTE VLRRFATDARVRSGHVIFGDDDSICWLTYDRQRDVLTLTAAPLSVAEILQSQLFAQKQTSILASATLSIAGTFDFVKSRI GLEDCQELMLDSPFDYAQQALVYIPNDIPEPNQRGYQPMIEQAIIDLAIASGGRMLALFTASNALRQTYTAIQEVLEDHG IGVMAQGIDGSRKALVDRLKEFPRSVLLGTNSFWEGVDVVGDALSVLVITKLPFAVPTDPIVAARSELFTDPFNEYSVPQ SILRFKQGFGRLIRSREDRGIVVVLDRRLLTKKYGQQFLDSLPPTRVRTGTLASLPGLVARFLQKVNGSSG >Mature_951_residues MNNRIYVAIDVETTGLQSGLDEIIEVAAVTFRGHEILDRFEQLVRPRQAVPLKITRLTGIDPAALAQAPRFNEIGADLAR FIGNRPIVGHSIGFDLTMLRAQGMQFNQPVYDTFELATLLLPQVSSYKLSALAAHLGIPHPDAHRALNDAEVTARLFAML SERMLQLDLATLSEMVRLMGKIGTPLRDLFEEALRQKARNAFRDPILAQQSTGTISAEPTLFSSAPDTGSPELPPLRPTG DTRPLDLDQIADLFSPEGVFGRAFPGYEPRPPQIEMARAVATAFNHSEPLIVEAGTGTGKSMAYLVPATLYAAQRGERVV ISTNTINLQDQLYNKDIPDLQRIFATAGLPTFRAALLKGRSNYLCLKRYHELRRLENLTTEEVRALLKIQLWLPTTTSGD RTELPLVDREQSAWNRVNVSVETCTGARCPHFRECYFFRARRAAESAHLVVVNHALLIADLAAASQVLPPYDHLVIDEAH NLEDVATDQLSFNLDQASLLKFLDDLFQTGGAQVVSGLLSELPAVLSEIGGGGAAGERITAAIERMRPSLIRARTAVYEC FNLLTRFVQLDPESGGQYDTRLRLTKGVRQRPEWQEIELAWQNLNDILALIGNELAGIEVQLRELEEAAGGLDDLLLRTE VLRRFATDARVRSGHVIFGDDDSICWLTYDRQRDVLTLTAAPLSVAEILQSQLFAQKQTSILASATLSIAGTFDFVKSRI GLEDCQELMLDSPFDYAQQALVYIPNDIPEPNQRGYQPMIEQAIIDLAIASGGRMLALFTASNALRQTYTAIQEVLEDHG IGVMAQGIDGSRKALVDRLKEFPRSVLLGTNSFWEGVDVVGDALSVLVITKLPFAVPTDPIVAARSELFTDPFNEYSVPQ SILRFKQGFGRLIRSREDRGIVVVLDRRLLTKKYGQQFLDSLPPTRVRTGTLASLPGLVARFLQKVNGSSG
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=717, Percent_Identity=28.7308228730823, Blast_Score=199, Evalue=1e-51, Organism=Escherichia coli, GI1788110, Length=263, Percent_Identity=37.6425855513308, Blast_Score=184, Evalue=3e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR006054 - InterPro: IPR006310 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 105065; Mature: 105065
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNRIYVAIDVETTGLQSGLDEIIEVAAVTFRGHEILDRFEQLVRPRQAVPLKITRLTGI CCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCC DPAALAQAPRFNEIGADLARFIGNRPIVGHSIGFDLTMLRAQGMQFNQPVYDTFELATLL CHHHHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHH LPQVSSYKLSALAAHLGIPHPDAHRALNDAEVTARLFAMLSERMLQLDLATLSEMVRLMG HCCCCCHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIGTPLRDLFEEALRQKARNAFRDPILAQQSTGTISAEPTLFSSAPDTGSPELPPLRPTG HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCEECCCCCCCCCCCCCCCCCC DTRPLDLDQIADLFSPEGVFGRAFPGYEPRPPQIEMARAVATAFNHSEPLIVEAGTGTGK CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC SMAYLVPATLYAAQRGERVVISTNTINLQDQLYNKDIPDLQRIFATAGLPTFRAALLKGR CEEHHHHHHHHHHCCCCEEEEEECEEEHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCC SNYLCLKRYHELRRLENLTTEEVRALLKIQLWLPTTTSGDRTELPLVDREQSAWNRVNVS CCCHHHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE VETCTGARCPHFRECYFFRARRAAESAHLVVVNHALLIADLAAASQVLPPYDHLVIDEAH EEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCHHEEECCCC NLEDVATDQLSFNLDQASLLKFLDDLFQTGGAQVVSGLLSELPAVLSEIGGGGAAGERIT CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH AAIERMRPSLIRARTAVYECFNLLTRFVQLDPESGGQYDTRLRLTKGVRQRPEWQEIELA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH WQNLNDILALIGNELAGIEVQLRELEEAAGGLDDLLLRTEVLRRFATDARVRSGHVIFGD HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECC DDSICWLTYDRQRDVLTLTAAPLSVAEILQSQLFAQKQTSILASATLSIAGTFDFVKSRI CCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLEDCQELMLDSPFDYAQQALVYIPNDIPEPNQRGYQPMIEQAIIDLAIASGGRMLALFT CHHHHHHHHHCCCHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE ASNALRQTYTAIQEVLEDHGIGVMAQGIDGSRKALVDRLKEFPRSVLLGTNSFWEGVDVV CHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHEECCCCHHHHHHHH GDALSVLVITKLPFAVPTDPIVAARSELFTDPFNEYSVPQSILRFKQGFGRLIRSREDRG HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC IVVVLDRRLLTKKYGQQFLDSLPPTRVRTGTLASLPGLVARFLQKVNGSSG EEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNNRIYVAIDVETTGLQSGLDEIIEVAAVTFRGHEILDRFEQLVRPRQAVPLKITRLTGI CCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCC DPAALAQAPRFNEIGADLARFIGNRPIVGHSIGFDLTMLRAQGMQFNQPVYDTFELATLL CHHHHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHH LPQVSSYKLSALAAHLGIPHPDAHRALNDAEVTARLFAMLSERMLQLDLATLSEMVRLMG HCCCCCHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIGTPLRDLFEEALRQKARNAFRDPILAQQSTGTISAEPTLFSSAPDTGSPELPPLRPTG HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCEECCCCCCCCCCCCCCCCCC DTRPLDLDQIADLFSPEGVFGRAFPGYEPRPPQIEMARAVATAFNHSEPLIVEAGTGTGK CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC SMAYLVPATLYAAQRGERVVISTNTINLQDQLYNKDIPDLQRIFATAGLPTFRAALLKGR CEEHHHHHHHHHHCCCCEEEEEECEEEHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCC SNYLCLKRYHELRRLENLTTEEVRALLKIQLWLPTTTSGDRTELPLVDREQSAWNRVNVS CCCHHHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE VETCTGARCPHFRECYFFRARRAAESAHLVVVNHALLIADLAAASQVLPPYDHLVIDEAH EEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCHHEEECCCC NLEDVATDQLSFNLDQASLLKFLDDLFQTGGAQVVSGLLSELPAVLSEIGGGGAAGERIT CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH AAIERMRPSLIRARTAVYECFNLLTRFVQLDPESGGQYDTRLRLTKGVRQRPEWQEIELA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH WQNLNDILALIGNELAGIEVQLRELEEAAGGLDDLLLRTEVLRRFATDARVRSGHVIFGD HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECC DDSICWLTYDRQRDVLTLTAAPLSVAEILQSQLFAQKQTSILASATLSIAGTFDFVKSRI CCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLEDCQELMLDSPFDYAQQALVYIPNDIPEPNQRGYQPMIEQAIIDLAIASGGRMLALFT CHHHHHHHHHCCCHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE ASNALRQTYTAIQEVLEDHGIGVMAQGIDGSRKALVDRLKEFPRSVLLGTNSFWEGVDVV CHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHEECCCCHHHHHHHH GDALSVLVITKLPFAVPTDPIVAARSELFTDPFNEYSVPQSILRFKQGFGRLIRSREDRG HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC IVVVLDRRLLTKKYGQQFLDSLPPTRVRTGTLASLPGLVARFLQKVNGSSG EEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]