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The map label for this gene is ydcM [C]

Identifier: 222524591

GI number: 222524591

Start: 1681758

End: 1682963

Strand: Reverse

Name: ydcM [C]

Synonym: Chy400_1315

Alternate gene names: 222524591

Gene position: 1682963-1681758 (Counterclockwise)

Preceding gene: 222524592

Following gene: 222524590

Centisome position: 31.94

GC content: 62.11

Gene sequence:

>1206_bases
ATGCGAGTGATCCTCACCCATAAGATTGAGCTTCGTCCCACCAAACAGCAAGAGTTGCTGCTACGTGAAGCTGTTGGTGT
TGCCCGCTTCGCCTACAACTGGGCCCTGGACGAGTGGAAGAAGCAATACTGCGCTGGCCTGACGCCTAACGAAGCTGCCC
TGCGCCGACAGTTGAACGCGATCAAGCGCGAGCAGTTCCCCTGGATGCTGCGCGTGCCCAAGTCCATCCCGCAACAGGCG
ATCAAGAATCTCGGCGCTGCATTCAAAAACTTCTTTGAGCGCCGCGCTGGCTACCCAACACACAAGAAGAAAGGCCGCGA
CGACAGTGCGCGGTTCGACAACGGGCCGGGCACGTTCCGCTGTGACGGCAAGTGCATCCGTCTGCCCGTGATCGGCTGGA
TCAGGATGCGCGAAGCCCTCCGCTTCACCGGCAAACCGCTCTCGGCCACGGTCAGCCGTGTCGCAGATCGCTGGTACGTC
GCCATCCCAGTTGAGATTGACCTGCCCGATCCCGTCTGCGATAACCAAGCGGCGGTGGGTGTCGATCTCGGCGTGACGAC
TGCGGCGACGCTCTCCAGCGGCGAGAAGCTGGCTGGGCCAAAGGCGTTGCAGGCGAACCTGGAGCGGCTGCGCCGGTTGA
GTCGCCGCCACAGCCGGAAGGTGAACGGCAGCAAAAACCAATACAAATCGGCGCTGAAGCTGGCTCGGCTGCACGCACGC
ATCGCCAACATCCGCCGCGACTGGCTGCACAAGACCACCACCCGTCTGGTGCGGACCTACGGCGTGATCGGCATCGAAGA
CCTGAACGTGCGGGGTATGTTGGGGAACCGGACGCTGGCACGCCACATTGCCGACATCGGTATGTACGAGTTCAAGCGGC
AATTGCAGTACAAGGCGGCGCTGTATGGGGTGGAAGTGGTCGAGGCAGATCGCTGGTTTGCGTCGTCGAAGACCTGCTCG
GTGTGCGGGGCGGTAACTGAGCAGATGCCGCTTGGGATGCGCGACTGGGTGTGCCCAGCGTGTGGGACGGATCACGATCG
GGACGTGAACGCAGCGAAGAATCTCCAGCGGATGGCGCTGTCTAGGGCGAGTTGCGCCCGAAGGAACGCCTGTGGAGAGG
CAGGCACTGGCCATGGCGACACGACCATGGTGAACCCAGCCTCGGTGAAGCAGGAATCAGACCTGTCCTGTTGGGGTATG
GTCTGA

Upstream 100 bases:

>100_bases
TGGTGTGTGATCTGCACGAGGTGACAGTAGCGATGTGCGCCAGGCTGTACGGCAAGCGCACAGCGGCCAATTGAGCCAGG
AACACGATTGAGGCCCTGCA

Downstream 100 bases:

>100_bases
GCAACGGAAGCCGGTCCAAGGCCGGCGCAGTCCACGCTACTGTAGGTCGCGATGAGCGACGAGCCAGAATGCCCGTCCCT
ACACGTTCGCTTTCACACCT

Product: transposase, IS607 family

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MRVILTHKIELRPTKQQELLLREAVGVARFAYNWALDEWKKQYCAGLTPNEAALRRQLNAIKREQFPWMLRVPKSIPQQA
IKNLGAAFKNFFERRAGYPTHKKKGRDDSARFDNGPGTFRCDGKCIRLPVIGWIRMREALRFTGKPLSATVSRVADRWYV
AIPVEIDLPDPVCDNQAAVGVDLGVTTAATLSSGEKLAGPKALQANLERLRRLSRRHSRKVNGSKNQYKSALKLARLHAR
IANIRRDWLHKTTTRLVRTYGVIGIEDLNVRGMLGNRTLARHIADIGMYEFKRQLQYKAALYGVEVVEADRWFASSKTCS
VCGAVTEQMPLGMRDWVCPACGTDHDRDVNAAKNLQRMALSRASCARRNACGEAGTGHGDTTMVNPASVKQESDLSCWGM
V

Sequences:

>Translated_401_residues
MRVILTHKIELRPTKQQELLLREAVGVARFAYNWALDEWKKQYCAGLTPNEAALRRQLNAIKREQFPWMLRVPKSIPQQA
IKNLGAAFKNFFERRAGYPTHKKKGRDDSARFDNGPGTFRCDGKCIRLPVIGWIRMREALRFTGKPLSATVSRVADRWYV
AIPVEIDLPDPVCDNQAAVGVDLGVTTAATLSSGEKLAGPKALQANLERLRRLSRRHSRKVNGSKNQYKSALKLARLHAR
IANIRRDWLHKTTTRLVRTYGVIGIEDLNVRGMLGNRTLARHIADIGMYEFKRQLQYKAALYGVEVVEADRWFASSKTCS
VCGAVTEQMPLGMRDWVCPACGTDHDRDVNAAKNLQRMALSRASCARRNACGEAGTGHGDTTMVNPASVKQESDLSCWGM
V
>Mature_401_residues
MRVILTHKIELRPTKQQELLLREAVGVARFAYNWALDEWKKQYCAGLTPNEAALRRQLNAIKREQFPWMLRVPKSIPQQA
IKNLGAAFKNFFERRAGYPTHKKKGRDDSARFDNGPGTFRCDGKCIRLPVIGWIRMREALRFTGKPLSATVSRVADRWYV
AIPVEIDLPDPVCDNQAAVGVDLGVTTAATLSSGEKLAGPKALQANLERLRRLSRRHSRKVNGSKNQYKSALKLARLHAR
IANIRRDWLHKTTTRLVRTYGVIGIEDLNVRGMLGNRTLARHIADIGMYEFKRQLQYKAALYGVEVVEADRWFASSKTCS
VCGAVTEQMPLGMRDWVCPACGTDHDRDVNAAKNLQRMALSRASCARRNACGEAGTGHGDTTMVNPASVKQESDLSCWGM
V

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=370, Percent_Identity=34.3243243243243, Blast_Score=196, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45018; Mature: 45018

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVILTHKIELRPTKQQELLLREAVGVARFAYNWALDEWKKQYCAGLTPNEAALRRQLNA
CEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IKREQFPWMLRVPKSIPQQAIKNLGAAFKNFFERRAGYPTHKKKGRDDSARFDNGPGTFR
HHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
CDGKCIRLPVIGWIRMREALRFTGKPLSATVSRVADRWYVAIPVEIDLPDPVCDNQAAVG
ECCEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCEE
VDLGVTTAATLSSGEKLAGPKALQANLERLRRLSRRHSRKVNGSKNQYKSALKLARLHAR
EECCCHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
IANIRRDWLHKTTTRLVRTYGVIGIEDLNVRGMLGNRTLARHIADIGMYEFKRQLQYKAA
HHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LYGVEVVEADRWFASSKTCSVCGAVTEQMPLGMRDWVCPACGTDHDRDVNAAKNLQRMAL
HHHHHEEECCHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHH
SRASCARRNACGEAGTGHGDTTMVNPASVKQESDLSCWGMV
HHHHHHHHHCCCCCCCCCCCCEEECCHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRVILTHKIELRPTKQQELLLREAVGVARFAYNWALDEWKKQYCAGLTPNEAALRRQLNA
CEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IKREQFPWMLRVPKSIPQQAIKNLGAAFKNFFERRAGYPTHKKKGRDDSARFDNGPGTFR
HHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
CDGKCIRLPVIGWIRMREALRFTGKPLSATVSRVADRWYVAIPVEIDLPDPVCDNQAAVG
ECCEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCEE
VDLGVTTAATLSSGEKLAGPKALQANLERLRRLSRRHSRKVNGSKNQYKSALKLARLHAR
EECCCHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
IANIRRDWLHKTTTRLVRTYGVIGIEDLNVRGMLGNRTLARHIADIGMYEFKRQLQYKAA
HHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LYGVEVVEADRWFASSKTCSVCGAVTEQMPLGMRDWVCPACGTDHDRDVNAAKNLQRMAL
HHHHHEEECCHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHH
SRASCARRNACGEAGTGHGDTTMVNPASVKQESDLSCWGMV
HHHHHHHHHCCCCCCCCCCCCEEECCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]