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The map label for this gene is sodA [H]

Identifier: 222524564

GI number: 222524564

Start: 1650819

End: 1651433

Strand: Reverse

Name: sodA [H]

Synonym: Chy400_1288

Alternate gene names: 222524564

Gene position: 1651433-1650819 (Counterclockwise)

Preceding gene: 222524565

Following gene: 222524562

Centisome position: 31.34

GC content: 56.1

Gene sequence:

>615_bases
ATGGCCTTTGAAGTTCCGCCGTTGCCTTACGACTACAATGCCCTTGAACCGTATATCGATGAAGCCACGATGCACTATCA
TCACGACAATCACCATCAGACGTATGTTACCAATCTGAATAATGCGCTGGCGAATTACCCGGAGTTGCAGAGCAAGACGA
TTGAAGAGCTGCTGGGTAATCTTGACGCCATCCCAGAGGCGATTCGGACGGCGGTGCGCAACAATGGTGGTGGGCACTGG
AACCATACCTTCTTCTGGGAGATTATGGCTCCCAATGCCGGCGGTGCGCCTACCGGTGATCTGGCGGCGGCGATTGATGC
GGCCTTCGGCAGCTTCGACGCTTTCAAAGAGAAGTTCAAGGCGGCGGCTCTGGGCCGGTTCGGTTCGGGATGGGCATGGT
TGGTGGCGGCAAAGGATGGTAGCCTCAGCATTATGAGCACTCCCAACCAGGACAACCCGCTGATGGAGGGGAAGACGGCC
ATCCTTGGGCTGGATGTATGGGAGCACGCCTATTACCTCAAGTACCAGTACAAGCGGGCCGCCTACGTTGATGCCTGGTG
GAACGTGGTGAATTGGGCCAAAGTTGCCGATCACTACGCAGCGGCGAAAGGTTAA

Upstream 100 bases:

>100_bases
GGCCTAGCACTTACTCGCACATCCGCGGTACAATACAGGTACGCCACAGATGACGGCCAGTGGTGGCCGTCGTTGTTTGC
AATTGCTACGGAGGTTTCAC

Downstream 100 bases:

>100_bases
TGTTGGTCGGGACGGGAATCTCAGCCGCGTAGTGCTCCGCGAACGTTGCCGGGCACTACGCAGTGGCGAAAGGTTAAATA
GACACGCTGAGAGGGGCCAC

Product: Superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MAFEVPPLPYDYNALEPYIDEATMHYHHDNHHQTYVTNLNNALANYPELQSKTIEELLGNLDAIPEAIRTAVRNNGGGHW
NHTFFWEIMAPNAGGAPTGDLAAAIDAAFGSFDAFKEKFKAAALGRFGSGWAWLVAAKDGSLSIMSTPNQDNPLMEGKTA
ILGLDVWEHAYYLKYQYKRAAYVDAWWNVVNWAKVADHYAAAKG

Sequences:

>Translated_204_residues
MAFEVPPLPYDYNALEPYIDEATMHYHHDNHHQTYVTNLNNALANYPELQSKTIEELLGNLDAIPEAIRTAVRNNGGGHW
NHTFFWEIMAPNAGGAPTGDLAAAIDAAFGSFDAFKEKFKAAALGRFGSGWAWLVAAKDGSLSIMSTPNQDNPLMEGKTA
ILGLDVWEHAYYLKYQYKRAAYVDAWWNVVNWAKVADHYAAAKG
>Mature_203_residues
AFEVPPLPYDYNALEPYIDEATMHYHHDNHHQTYVTNLNNALANYPELQSKTIEELLGNLDAIPEAIRTAVRNNGGGHWN
HTFFWEIMAPNAGGAPTGDLAAAIDAAFGSFDAFKEKFKAAALGRFGSGWAWLVAAKDGSLSIMSTPNQDNPLMEGKTAI
LGLDVWEHAYYLKYQYKRAAYVDAWWNVVNWAKVADHYAAAKG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=49.009900990099, Blast_Score=185, Evalue=3e-47,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=49.009900990099, Blast_Score=185, Evalue=3e-47,
Organism=Homo sapiens, GI67782309, Length=202, Percent_Identity=40.0990099009901, Blast_Score=134, Evalue=6e-32,
Organism=Escherichia coli, GI1790342, Length=209, Percent_Identity=50.7177033492823, Blast_Score=211, Evalue=2e-56,
Organism=Escherichia coli, GI1787946, Length=201, Percent_Identity=48.7562189054726, Blast_Score=193, Evalue=6e-51,
Organism=Caenorhabditis elegans, GI17506561, Length=202, Percent_Identity=41.0891089108911, Blast_Score=153, Evalue=5e-38,
Organism=Caenorhabditis elegans, GI17569479, Length=201, Percent_Identity=42.7860696517413, Blast_Score=153, Evalue=7e-38,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=40.0966183574879, Blast_Score=143, Evalue=2e-35,
Organism=Drosophila melanogaster, GI17136812, Length=202, Percent_Identity=43.0693069306931, Blast_Score=161, Evalue=3e-40,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22678; Mature: 22547

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFEVPPLPYDYNALEPYIDEATMHYHHDNHHQTYVTNLNNALANYPELQSKTIEELLGN
CCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHH
LDAIPEAIRTAVRNNGGGHWNHTFFWEIMAPNAGGAPTGDLAAAIDAAFGSFDAFKEKFK
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHH
AAALGRFGSGWAWLVAAKDGSLSIMSTPNQDNPLMEGKTAILGLDVWEHAYYLKYQYKRA
HHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEHHHHHEEEEEEEHHHH
AYVDAWWNVVNWAKVADHYAAAKG
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFEVPPLPYDYNALEPYIDEATMHYHHDNHHQTYVTNLNNALANYPELQSKTIEELLGN
CCCCCCCCCCCCCCCHHHHHHEEEEECCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHH
LDAIPEAIRTAVRNNGGGHWNHTFFWEIMAPNAGGAPTGDLAAAIDAAFGSFDAFKEKFK
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHH
AAALGRFGSGWAWLVAAKDGSLSIMSTPNQDNPLMEGKTAILGLDVWEHAYYLKYQYKRA
HHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEHHHHHEEEEEEEHHHH
AYVDAWWNVVNWAKVADHYAAAKG
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]