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The map label for this gene is araQ [H]

Identifier: 222524489

GI number: 222524489

Start: 1546301

End: 1547167

Strand: Direct

Name: araQ [H]

Synonym: Chy400_1213

Alternate gene names: 222524489

Gene position: 1546301-1547167 (Clockwise)

Preceding gene: 222524488

Following gene: 222524490

Centisome position: 29.35

GC content: 47.52

Gene sequence:

>867_bases
ATGGCAACTATAGCAAGATCACAAACACTTGCAAACCGTTCACGGATGACGCTCAGCAGTGCGGCTGGCTGGTATGTTGT
ATTAGGCATTGCCAGCGTTGTAACAATCTTTCCCTTCTTTTGGTTGGTGACAACGGCATTGAAAGGGCCAAATGATGCAG
TGTTTAGCTTCCCACCACAATGGATTCCTTATGAGCCAACGTTACATAATTTTACTCGTGTCTGGCAACAAATTACTGTC
TGGCGCTTTTTTCTGAATAGTCTATTTGTCGCAACCTGCACCGTGATCTTGAATGTTACCGTCTCGGCATTGGCTGCATA
TCCTCTGGCCAAGATGCGGTTTCCAGGACGTGAATTAATCTTTTACAGTCTGTTAGCAACGTTGATCGTGCCTCTCGAAC
TCACTTATGTGCCCGGCTATATCCTGGCAGTACGGGTCTTTCGTTATGATGACACCCTTTGGAGTTTGATATTTCCTAAC
GTCTTCAGTGCCTTCAATATCTTTTTGCTGCGTCAAGCGTTTCAAGCTGTACCAAATGATCTCATCGATGCAGCACGGAT
TGATGGTGCTAGCGAATTACGAATCTGGGCACAAATCGTTTTGCCTACAGTTCGTCCGTCACTGGCAACGGCGGCTGTGT
TCACGGGTGTCACCTCGTGGAACGCACTCCTCTGGCCGTCACTGATGCTGCGGACGCGCGAGATATATACGTTACCGGTT
GGTTTGAACACCCTGCGAGGAATGTTTTCTGCAGATTTTCGGCTCATTGCTGCCGGAACAATTATTGCAATCATTCCCAT
ATTGATTGGGTTCATCTTTGCCCAACGCTACTTTGTCAGTGGTCTGAGCGGCGCAGTTAAGGGATAA

Upstream 100 bases:

>100_bases
TGCTTCAGCAATAGCGATGGTTTTATTAATCATAACGCTGAGTTTTTCGATTATCAATGTTCGTCTGCTTGAGCAGCGTG
ATGATTAAGGAGTAGAGTCA

Downstream 100 bases:

>100_bases
TAATATCAGGTTCTGTCAAACCCCTGTTGAATAGCAATAGCTCATCGTGTCTTGAAGGAATGGAGATCATCGATGGCGTG
CCGCCGTGCTCATTATGTGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MATIARSQTLANRSRMTLSSAAGWYVVLGIASVVTIFPFFWLVTTALKGPNDAVFSFPPQWIPYEPTLHNFTRVWQQITV
WRFFLNSLFVATCTVILNVTVSALAAYPLAKMRFPGRELIFYSLLATLIVPLELTYVPGYILAVRVFRYDDTLWSLIFPN
VFSAFNIFLLRQAFQAVPNDLIDAARIDGASELRIWAQIVLPTVRPSLATAAVFTGVTSWNALLWPSLMLRTREIYTLPV
GLNTLRGMFSADFRLIAAGTIIAIIPILIGFIFAQRYFVSGLSGAVKG

Sequences:

>Translated_288_residues
MATIARSQTLANRSRMTLSSAAGWYVVLGIASVVTIFPFFWLVTTALKGPNDAVFSFPPQWIPYEPTLHNFTRVWQQITV
WRFFLNSLFVATCTVILNVTVSALAAYPLAKMRFPGRELIFYSLLATLIVPLELTYVPGYILAVRVFRYDDTLWSLIFPN
VFSAFNIFLLRQAFQAVPNDLIDAARIDGASELRIWAQIVLPTVRPSLATAAVFTGVTSWNALLWPSLMLRTREIYTLPV
GLNTLRGMFSADFRLIAAGTIIAIIPILIGFIFAQRYFVSGLSGAVKG
>Mature_287_residues
ATIARSQTLANRSRMTLSSAAGWYVVLGIASVVTIFPFFWLVTTALKGPNDAVFSFPPQWIPYEPTLHNFTRVWQQITVW
RFFLNSLFVATCTVILNVTVSALAAYPLAKMRFPGRELIFYSLLATLIVPLELTYVPGYILAVRVFRYDDTLWSLIFPNV
FSAFNIFLLRQAFQAVPNDLIDAARIDGASELRIWAQIVLPTVRPSLATAAVFTGVTSWNALLWPSLMLRTREIYTLPVG
LNTLRGMFSADFRLIAAGTIIAIIPILIGFIFAQRYFVSGLSGAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=286, Percent_Identity=30.7692307692308, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787571, Length=277, Percent_Identity=30.6859205776173, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1790464, Length=275, Percent_Identity=28.7272727272727, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32142; Mature: 32011

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIARSQTLANRSRMTLSSAAGWYVVLGIASVVTIFPFFWLVTTALKGPNDAVFSFPPQ
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
WIPYEPTLHNFTRVWQQITVWRFFLNSLFVATCTVILNVTVSALAAYPLAKMRFPGRELI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FYSLLATLIVPLELTYVPGYILAVRVFRYDDTLWSLIFPNVFSAFNIFLLRQAFQAVPND
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LIDAARIDGASELRIWAQIVLPTVRPSLATAAVFTGVTSWNALLWPSLMLRTREIYTLPV
HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECC
GLNTLRGMFSADFRLIAAGTIIAIIPILIGFIFAQRYFVSGLSGAVKG
CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ATIARSQTLANRSRMTLSSAAGWYVVLGIASVVTIFPFFWLVTTALKGPNDAVFSFPPQ
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
WIPYEPTLHNFTRVWQQITVWRFFLNSLFVATCTVILNVTVSALAAYPLAKMRFPGRELI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FYSLLATLIVPLELTYVPGYILAVRVFRYDDTLWSLIFPNVFSAFNIFLLRQAFQAVPND
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LIDAARIDGASELRIWAQIVLPTVRPSLATAAVFTGVTSWNALLWPSLMLRTREIYTLPV
HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECC
GLNTLRGMFSADFRLIAAGTIIAIIPILIGFIFAQRYFVSGLSGAVKG
CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]