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The map label for this gene is ssb1 [H]

Identifier: 222524397

GI number: 222524397

Start: 1417810

End: 1418226

Strand: Direct

Name: ssb1 [H]

Synonym: Chy400_1121

Alternate gene names: 222524397

Gene position: 1417810-1418226 (Clockwise)

Preceding gene: 222524396

Following gene: 222524398

Centisome position: 26.91

GC content: 54.92

Gene sequence:

>417_bases
ATGGCGCGTGATCTGAATAAAGTGATGATTATTGGTCGTCTTGGCGTCGATCCCGAACTACGTTACACCGCATCCGGCGC
ACCGGTCGCTACGTTTCGTGTTGCTGCCAGTCGCCAGTGGCGTGACCAGAATGGCGATCTGCACGATGAGACCGAATGGT
TTAATGTTGTTGCCTGGAATCGATTGGCTGAAATTTGCCACCAATATCTGAGTCGGGGCGCACGGGTGTATATCGAGGGC
CGCCTGCAAACGCGAACCTGGGAGGATGCGCAGAGTGGTCAGACCCGTTCACGGGTTGAAGTGATTGTGCAGGATATGAT
TTTGCTCGATCAGCGTCCATCCCGTTCTGATGAACCGTCGCGCGGCCCTCGCCGTGAACCACCGCCCGATATTGGCGATG
ATGATATTCCGTTTTAG

Upstream 100 bases:

>100_bases
GTCGAACCGGCAGAGTCGGAAACAGAGGAAGCGCCGAGTGAGGCATAGGCGTTTACCGGTGTGCTGGTAGCGATTGGGAC
AACTGTGGAGGGAAGACGCC

Downstream 100 bases:

>100_bases
CCTATGTCACAAACACCCAAACCGCCACGGAGCGCACCGTCATCGGCGCCAACCCCTGTGCCGCGGCGTCCATCACGTCG
CCGCATGGAAGAAGAGCGCC

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB 1; Helix-destabilizing protein 1 [H]

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MARDLNKVMIIGRLGVDPELRYTASGAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAEICHQYLSRGARVYIEG
RLQTRTWEDAQSGQTRSRVEVIVQDMILLDQRPSRSDEPSRGPRREPPPDIGDDDIPF

Sequences:

>Translated_138_residues
MARDLNKVMIIGRLGVDPELRYTASGAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAEICHQYLSRGARVYIEG
RLQTRTWEDAQSGQTRSRVEVIVQDMILLDQRPSRSDEPSRGPRREPPPDIGDDDIPF
>Mature_137_residues
ARDLNKVMIIGRLGVDPELRYTASGAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAEICHQYLSRGARVYIEGR
LQTRTWEDAQSGQTRSRVEVIVQDMILLDQRPSRSDEPSRGPRREPPPDIGDDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=125, Percent_Identity=28.8, Blast_Score=67, Evalue=7e-12,
Organism=Escherichia coli, GI1790494, Length=103, Percent_Identity=48.5436893203884, Blast_Score=106, Evalue=5e-25,
Organism=Drosophila melanogaster, GI85725234, Length=108, Percent_Identity=31.4814814814815, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24647376, Length=108, Percent_Identity=31.4814814814815, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 15861; Mature: 15730

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARDLNKVMIIGRLGVDPELRYTASGAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWN
CCCCCCEEEEEEECCCCCCEEEECCCCCEEEEEEHHCCCCCCCCCCCCCCCHHHHHHHHH
RLAEICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLDQRPSRSDEPS
HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
RGPRREPPPDIGDDDIPF
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARDLNKVMIIGRLGVDPELRYTASGAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWN
CCCCCEEEEEEECCCCCCEEEECCCCCEEEEEEHHCCCCCCCCCCCCCCCHHHHHHHHH
RLAEICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLDQRPSRSDEPS
HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
RGPRREPPPDIGDDDIPF
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]