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The map label for this gene is cph1 [H]

Identifier: 222523855

GI number: 222523855

Start: 670460

End: 671530

Strand: Direct

Name: cph1 [H]

Synonym: Chy400_0563

Alternate gene names: 222523855

Gene position: 670460-671530 (Clockwise)

Preceding gene: 222523853

Following gene: 222523856

Centisome position: 12.72

GC content: 52.1

Gene sequence:

>1071_bases
ATGTCGTTTGCATCAATTCGCCATTTCTGGCGTACCAACGAACCGATAGCGAGCGCAATTCGTCTGACCGGTTGGTACCT
GCTGATTGCCGGTTCGTGGGTACTCTTTTCGGATCGGTTGCTGGTTGCTATTATCGTGAATATAGACGAATTGACGAACT
GGCAAACGATCAAAGGCTGGTTCTTCGTGCTGCTGACGGCAGGCTGGCTGGGGATTGAGCGCTGGCGAACGATGAAACAC
CAGCAGCGGATCAATGATGAACTCCGGGCAGCGAATGCTGCCTTGCAAGAGTTAAATGCCTCGCTCGAACAGCGCATCAT
GGAGCGTACAGCACCCTTACAGATGGCCAACCAGGCATTAAGTGAACTTAATCAGGAACTAGAAACCTTCACAGCAACTA
TCTCGCATGATCTGAAAGCGCCACTACGTGTTATTGATGGGTATAGTCAGCTTCTCCTCCGCTTCCACATCCAGCGCCTC
GACGAGGATGGACAGCAGTGTCTGCACAGCATTCGGACAGCAGTAGCGCAGATGAACCAACTGATCGATGATCTACTGGA
ATATACTCACGTTGAGCGAAAAACACTGCACCACAGCGTCATTGATTTGTCCGGCCTGATTGATGAACTGCTGGGCTATT
ACGCGGATCAGATTCTTGAGCACCATATTGTGATTGAGCGTGACTTGCGCTGCACCCACCTGTATGCCGATGCCACCGGT
CTGGCGCTTGCCTTGCGCAACCTGATCGATAACGCGATCAAATTCAGTGCGCGTGTTCCCCAACCACGCCTGGCCATCGG
GAGTGATGTTCACAATGAGATGGTACGGTTGTGGGTCAAAGATAATGGAATTGGCTTTGACATGCGCGATCACGAGCGCA
TTTTTACCATTTTTCAGCGTTTACATCCACAGGAGACCTACCCGGGTTCAGGGGTTGGGCTGGCGATTGTCCGCAAAGCG
ATTGAACGCATGGGCGGGCGAGTATGGGCCGAAAGCAGTCCCGGTGTCGGTGCTGTCTTCTATCTGGAGATTCCACATGT
TGGCTTATCCGAACCATCTGCTGCTCATTGA

Upstream 100 bases:

>100_bases
TTAGTGTGATATGATAAGAAAAGTAGCTCGTACAAGAGCACATCCCCGTCAGATGACTCCACGACCTATTCGCATTGCAT
ACACTCTCTGGGATAGAGAT

Downstream 100 bases:

>100_bases
AGATAATCCTTTCGACGCCGATCTGTTCCGACGCACAATGCAGTTTTACCATCCAGAGATTGCTATCACGCACTTTTCAT
CATACCGGGCAGCCTACGAA

Product: histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSFASIRHFWRTNEPIASAIRLTGWYLLIAGSWVLFSDRLLVAIIVNIDELTNWQTIKGWFFVLLTAGWLGIERWRTMKH
QQRINDELRAANAALQELNASLEQRIMERTAPLQMANQALSELNQELETFTATISHDLKAPLRVIDGYSQLLLRFHIQRL
DEDGQQCLHSIRTAVAQMNQLIDDLLEYTHVERKTLHHSVIDLSGLIDELLGYYADQILEHHIVIERDLRCTHLYADATG
LALALRNLIDNAIKFSARVPQPRLAIGSDVHNEMVRLWVKDNGIGFDMRDHERIFTIFQRLHPQETYPGSGVGLAIVRKA
IERMGGRVWAESSPGVGAVFYLEIPHVGLSEPSAAH

Sequences:

>Translated_356_residues
MSFASIRHFWRTNEPIASAIRLTGWYLLIAGSWVLFSDRLLVAIIVNIDELTNWQTIKGWFFVLLTAGWLGIERWRTMKH
QQRINDELRAANAALQELNASLEQRIMERTAPLQMANQALSELNQELETFTATISHDLKAPLRVIDGYSQLLLRFHIQRL
DEDGQQCLHSIRTAVAQMNQLIDDLLEYTHVERKTLHHSVIDLSGLIDELLGYYADQILEHHIVIERDLRCTHLYADATG
LALALRNLIDNAIKFSARVPQPRLAIGSDVHNEMVRLWVKDNGIGFDMRDHERIFTIFQRLHPQETYPGSGVGLAIVRKA
IERMGGRVWAESSPGVGAVFYLEIPHVGLSEPSAAH
>Mature_355_residues
SFASIRHFWRTNEPIASAIRLTGWYLLIAGSWVLFSDRLLVAIIVNIDELTNWQTIKGWFFVLLTAGWLGIERWRTMKHQ
QRINDELRAANAALQELNASLEQRIMERTAPLQMANQALSELNQELETFTATISHDLKAPLRVIDGYSQLLLRFHIQRLD
EDGQQCLHSIRTAVAQMNQLIDDLLEYTHVERKTLHHSVIDLSGLIDELLGYYADQILEHHIVIERDLRCTHLYADATGL
ALALRNLIDNAIKFSARVPQPRLAIGSDVHNEMVRLWVKDNGIGFDMRDHERIFTIFQRLHPQETYPGSGVGLAIVRKAI
ERMGGRVWAESSPGVGAVFYLEIPHVGLSEPSAAH

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=234, Percent_Identity=28.6324786324786, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI145693157, Length=248, Percent_Identity=26.2096774193548, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1789149, Length=279, Percent_Identity=27.2401433691756, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786912, Length=235, Percent_Identity=28.936170212766, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87081816, Length=278, Percent_Identity=26.978417266187, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790346, Length=233, Percent_Identity=28.3261802575107, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788713, Length=230, Percent_Identity=23.9130434782609, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082128, Length=235, Percent_Identity=25.1063829787234, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788549, Length=223, Percent_Identity=26.457399103139, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788393, Length=235, Percent_Identity=24.6808510638298, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790861, Length=203, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 40577; Mature: 40446

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFASIRHFWRTNEPIASAIRLTGWYLLIAGSWVLFSDRLLVAIIVNIDELTNWQTIKGW
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHEEEHHHHCCCHHHHHH
FFVLLTAGWLGIERWRTMKHQQRINDELRAANAALQELNASLEQRIMERTAPLQMANQAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SELNQELETFTATISHDLKAPLRVIDGYSQLLLRFHIQRLDEDGQQCLHSIRTAVAQMNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LIDDLLEYTHVERKTLHHSVIDLSGLIDELLGYYADQILEHHIVIERDLRCTHLYADATG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEHHHHH
LALALRNLIDNAIKFSARVPQPRLAIGSDVHNEMVRLWVKDNGIGFDMRDHERIFTIFQR
HHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHH
LHPQETYPGSGVGLAIVRKAIERMGGRVWAESSPGVGAVFYLEIPHVGLSEPSAAH
HCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
SFASIRHFWRTNEPIASAIRLTGWYLLIAGSWVLFSDRLLVAIIVNIDELTNWQTIKGW
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHEEEHHHHCCCHHHHHH
FFVLLTAGWLGIERWRTMKHQQRINDELRAANAALQELNASLEQRIMERTAPLQMANQAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SELNQELETFTATISHDLKAPLRVIDGYSQLLLRFHIQRLDEDGQQCLHSIRTAVAQMNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LIDDLLEYTHVERKTLHHSVIDLSGLIDELLGYYADQILEHHIVIERDLRCTHLYADATG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEHHHHH
LALALRNLIDNAIKFSARVPQPRLAIGSDVHNEMVRLWVKDNGIGFDMRDHERIFTIFQR
HHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHH
LHPQETYPGSGVGLAIVRKAIERMGGRVWAESSPGVGAVFYLEIPHVGLSEPSAAH
HCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]