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The map label for this gene is ysgA [H]

Identifier: 222523706

GI number: 222523706

Start: 485792

End: 486574

Strand: Direct

Name: ysgA [H]

Synonym: Chy400_0412

Alternate gene names: 222523706

Gene position: 485792-486574 (Clockwise)

Preceding gene: 222523705

Following gene: 222523707

Centisome position: 9.22

GC content: 61.17

Gene sequence:

>783_bases
GTGGCGTTGATTTCCAGCCCTGCAAATCACCACGTTAAATGGCTGCGCTCGCTCGCCGAATCGGCCCGCCACCGGCGACG
CGAGCGTAGCTTCGTTATTGAAGGTGTGCGCCTCGTTACCGATGCCCTTACTGCCGGTGCTGAGGTGCGCCTTGTGCTCT
ACGCTCCCGACCAACTGGCAACGACGACCGCCGGCACTGCACTGCTCAATCGCCTCCGTCACCTGCCTCATTGCTTTCCG
GCCACTCCCGCTGTTATTGTCGCCGCCGCCGATACTGAACAACCACAAGGCGTTGTTGCCGCAGTGACCTGGCCAGAATT
ACCGCCCCGCCCTGGTCTTCGGCTGGTCCTGGATGCCATTCAAGACCCTGGCAATGTTGGGACGCTGCTCCGTTCCGCAG
CCGCGGCTGGAGTCGGGCTTGTGATGTGTGCCCCCGGTACCGTCGATCCCTTCAATCCCAAGGTGGCCCGCGCCGCAATG
GGAGCCCATTTTTTAGTACCATTGCGGGTCTCGCCCTGGGAGACGATACGTGCTGAGTTGCAGTCATACACTGTGTATGC
TGCCGACAGCGCCGGTCAACAGCCCTACTATGCCGTCGATTGGCGTCAACCGGCGGCGCTCATTGTTGGCAACGAAGCCC
ATGGCTTGAGCGAACCTGCACGTGCGCTGGCGCATCAGACGATTACCATCCCGATGAGCGGTTCTATCGAGTCGCTCAAC
GCAGGGGTGGCCGGCAGCATCATCCTGTTTGAAGCGCTCCGGCAACAGACGGTTGCTCATTAG

Upstream 100 bases:

>100_bases
AGATGCTCGCCGATCTGGCAGTTCGCGATCCGCAGGCGTTTGCCCGCATTGTCGAGCAGGCACAGGCTGCGGTTACTGCA
TAACGATCCCCTGATCTGCT

Downstream 100 bases:

>100_bases
ACTCAGAATAAACGTGGTACCGGGACACCTGCTGGTGTAGCCCACCATTGTTTGTTACACTAACCCGAACTCGGATTATA
ATAGCAGAGAGATACCACTT

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MALISSPANHHVKWLRSLAESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLATTTAGTALLNRLRHLPHCFP
ATPAVIVAAADTEQPQGVVAAVTWPELPPRPGLRLVLDAIQDPGNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAM
GAHFLVPLRVSPWETIRAELQSYTVYAADSAGQQPYYAVDWRQPAALIVGNEAHGLSEPARALAHQTITIPMSGSIESLN
AGVAGSIILFEALRQQTVAH

Sequences:

>Translated_260_residues
MALISSPANHHVKWLRSLAESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLATTTAGTALLNRLRHLPHCFP
ATPAVIVAAADTEQPQGVVAAVTWPELPPRPGLRLVLDAIQDPGNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAM
GAHFLVPLRVSPWETIRAELQSYTVYAADSAGQQPYYAVDWRQPAALIVGNEAHGLSEPARALAHQTITIPMSGSIESLN
AGVAGSIILFEALRQQTVAH
>Mature_259_residues
ALISSPANHHVKWLRSLAESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLATTTAGTALLNRLRHLPHCFPA
TPAVIVAAADTEQPQGVVAAVTWPELPPRPGLRLVLDAIQDPGNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAMG
AHFLVPLRVSPWETIRAELQSYTVYAADSAGQQPYYAVDWRQPAALIVGNEAHGLSEPARALAHQTITIPMSGSIESLNA
GVAGSIILFEALRQQTVAH

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=319, Percent_Identity=28.8401253918495, Blast_Score=112, Evalue=5e-25,
Organism=Escherichia coli, GI1790623, Length=146, Percent_Identity=36.986301369863, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1790083, Length=157, Percent_Identity=30.5732484076433, Blast_Score=68, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24666840, Length=275, Percent_Identity=25.8181818181818, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27666; Mature: 27535

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALISSPANHHVKWLRSLAESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
TTTAGTALLNRLRHLPHCFPATPAVIVAAADTEQPQGVVAAVTWPELPPRPGLRLVLDAI
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHH
QDPGNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAMGAHFLVPLRVSPWETIRAEL
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCEEEEEEECCCHHHHHHHH
QSYTVYAADSAGQQPYYAVDWRQPAALIVGNEAHGLSEPARALAHQTITIPMSGSIESLN
HHEEEEEECCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHCEEEEECCCCHHHHC
AGVAGSIILFEALRQQTVAH
CCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALISSPANHHVKWLRSLAESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
TTTAGTALLNRLRHLPHCFPATPAVIVAAADTEQPQGVVAAVTWPELPPRPGLRLVLDAI
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHH
QDPGNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAMGAHFLVPLRVSPWETIRAEL
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCEEEEEEECCCHHHHHHHH
QSYTVYAADSAGQQPYYAVDWRQPAALIVGNEAHGLSEPARALAHQTITIPMSGSIESLN
HHEEEEEECCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHCEEEEECCCCHHHHC
AGVAGSIILFEALRQQTVAH
CCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]