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The map label for this gene is opuCD [H]

Identifier: 222151711

GI number: 222151711

Start: 1584733

End: 1585425

Strand: Direct

Name: opuCD [H]

Synonym: MCCL_1464

Alternate gene names: 222151711

Gene position: 1584733-1585425 (Clockwise)

Preceding gene: 222151710

Following gene: 222151712

Centisome position: 75.38

GC content: 45.45

Gene sequence:

>693_bases
ATGGAGAATCTTAATACATTCGAACAATTCATCCATTACTTTCAGGATAATGCAGGATATGTCTTCCAGCTTTTCCTTGA
GCACTTTCTAATCAGTATCTATGGTGTACTGCTGGCAGCCATAGTAGGAATACCGATTGGTGTATGGATTGCCAGACATA
GACGTCTTGTGGCACCTGTGATTTCTGTTGCGAATATCATACAAACGATTCCTGCCATCGCTCTGCTTGCACTACTCATG
CTTGCGATGGGACTTGGTAAGAAGACTGTAATCATGGCTGTCTTCCTCTATGCCTTATTGCCTATTATCAAGAATACATA
TACAGGCATCAAAGCCGTCGACGAACATATCGTCGATGCTGGCCGTGGCATGGGGATGACAAAACGTCAACTACTGACAA
TGGTAGAGTTACCTCTTAGCCTCTCAGTCATCATCGCAGGTATCCGTATCGCGCTCGTTATCGCAATCGGAGTCACTGCT
ATCGGCTCATTTATCGGGGCACAAAGCTTAGGTGACATCATCATCCGTGGAACAAATGCCACGGATGGTACATCAATCAT
CCTTGCCGGTGCATTACCGACTGCGTTGATGGCTGTGCTTGCAGACATTATACTGGGTCTTATCGAACGTAGACTGGACC
CGACAAAACGCAAGAAATTAAATCAAGCTGCACCAAGTACAGAGAACGAGTAA

Upstream 100 bases:

>100_bases
AAAAGCTCAACTATGAGGTTGATAATAACCTGAAAGAACCTGCAGTAGTAGCAGAAGCCTACTTAAAATCACATAATTAC
TTCAAAGGAGGTGCGAAATA

Downstream 100 bases:

>100_bases
TTATTATGAACCTCAATATCATTATGGTACTCTTAAGTTAATTAAATCAATCGGAGGAATTCTATGAAATCTAGACAGTT
ATTATCACTATTACTCGGTT

Product: glycine/betaine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MENLNTFEQFIHYFQDNAGYVFQLFLEHFLISIYGVLLAAIVGIPIGVWIARHRRLVAPVISVANIIQTIPAIALLALLM
LAMGLGKKTVIMAVFLYALLPIIKNTYTGIKAVDEHIVDAGRGMGMTKRQLLTMVELPLSLSVIIAGIRIALVIAIGVTA
IGSFIGAQSLGDIIIRGTNATDGTSIILAGALPTALMAVLADIILGLIERRLDPTKRKKLNQAAPSTENE

Sequences:

>Translated_230_residues
MENLNTFEQFIHYFQDNAGYVFQLFLEHFLISIYGVLLAAIVGIPIGVWIARHRRLVAPVISVANIIQTIPAIALLALLM
LAMGLGKKTVIMAVFLYALLPIIKNTYTGIKAVDEHIVDAGRGMGMTKRQLLTMVELPLSLSVIIAGIRIALVIAIGVTA
IGSFIGAQSLGDIIIRGTNATDGTSIILAGALPTALMAVLADIILGLIERRLDPTKRKKLNQAAPSTENE
>Mature_230_residues
MENLNTFEQFIHYFQDNAGYVFQLFLEHFLISIYGVLLAAIVGIPIGVWIARHRRLVAPVISVANIIQTIPAIALLALLM
LAMGLGKKTVIMAVFLYALLPIIKNTYTGIKAVDEHIVDAGRGMGMTKRQLLTMVELPLSLSVIIAGIRIALVIAIGVTA
IGSFIGAQSLGDIIIRGTNATDGTSIILAGALPTALMAVLADIILGLIERRLDPTKRKKLNQAAPSTENE

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=184, Percent_Identity=37.5, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788451, Length=211, Percent_Identity=29.8578199052133, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789033, Length=142, Percent_Identity=32.3943661971831, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87081802, Length=160, Percent_Identity=30, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1786564, Length=203, Percent_Identity=25.1231527093596, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24752; Mature: 24752

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLNTFEQFIHYFQDNAGYVFQLFLEHFLISIYGVLLAAIVGIPIGVWIARHRRLVAPV
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISVANIIQTIPAIALLALLMLAMGLGKKTVIMAVFLYALLPIIKNTYTGIKAVDEHIVDA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRGMGMTKRQLLTMVELPLSLSVIIAGIRIALVIAIGVTAIGSFIGAQSLGDIIIRGTNA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC
TDGTSIILAGALPTALMAVLADIILGLIERRLDPTKRKKLNQAAPSTENE
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MENLNTFEQFIHYFQDNAGYVFQLFLEHFLISIYGVLLAAIVGIPIGVWIARHRRLVAPV
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISVANIIQTIPAIALLALLMLAMGLGKKTVIMAVFLYALLPIIKNTYTGIKAVDEHIVDA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRGMGMTKRQLLTMVELPLSLSVIIAGIRIALVIAIGVTAIGSFIGAQSLGDIIIRGTNA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC
TDGTSIILAGALPTALMAVLADIILGLIERRLDPTKRKKLNQAAPSTENE
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]