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The map label for this gene is yrvN [H]

Identifier: 222151512

GI number: 222151512

Start: 1367845

End: 1369104

Strand: Direct

Name: yrvN [H]

Synonym: MCCL_1265

Alternate gene names: 222151512

Gene position: 1367845-1369104 (Clockwise)

Preceding gene: 222151510

Following gene: 222151559

Centisome position: 65.06

GC content: 41.19

Gene sequence:

>1260_bases
TTGGAACCATTAGCATATAGAATGAGACCGAATACGATTGATGATATCATCGGACAGGCACATCTCGTTGGTCCTCGTGG
CATTATCAGACGTATGGTTGAGGCGAAACGTTTGTCCTCAATGATATTATATGGACCTCCCGGCATTGGCAAGACAAGTA
TCGCACAAGCCATCGCTGGAAGTACAAATCTTAAATTCAGACAATTAAATGCTGTAACAAATACTAAGAAAGATATGCAG
CTCATCGCTGAAGAGGCAAAGATGAGTGGTCAAGTCATATTATTACTGGATGAAATTCATCGACTCGATAAAGGAAAACA
AGATTTTTTGCTGCCGCATCTAGAAAAGGGCAGTATTATACTGATTGGTGCAACAACGAGCAATCCATATCATGCTATTA
ATCCTGCCATTCGTAGCAGGACACAAATTTTCGAATTGTACCCACACGGCGATAAAGAAGTAAAGCAGGCGTTGACGCGT
GCTTTAAATGATGATGTGAATGGATATGGTAAAAAAGATGTTAAAATTGATGATGATGCAGTTTCTCACTTTGTCCAAAG
TGCTGCCGGGGATATCAGAACTGCACTGAATGCACTGGAACTTGCAGTTTTATCTGCACAAGGTGACCCTGTTCATATAA
CGTTACAAGATGCGAAAGATTGTCTGCAGAAACCAAGTTTTAATTTCGATGCAGATGGGGATATGCATTACGATATAATG
AGTGCATTTCAGAAATCCATTCGTGGTAGTGATGTTGATGCAAGCCTCCATTATTTAGCACGCCTGATTGAAGGTGGAGA
CTTACCGACAATTGCGAGACGTCTGCTCGTCATCAGCTATGAAGATGTTGGACTTGCCTCACCAGGTGCTGGTGCAAGAA
CCCTCGCTGCGATAGAATCTGCAGAACGTCTAGGATTTCCGGAAGCACGCATCCCACTCGCACAAGCTGTGATCGAATTA
TGTTTAAGTCCGAAATCAAACTCTGGTATCAGTGCGATCGATCATGCACTAAAAGATGTTAAATCCGGTAAAGTCGGTGC
GATACCGAAACATTTGAAAGATGCACATTATCAAGGTGCCAAAGACTTAGGAAATGGTGTTGATTATAAATATCCACACA
GCTTTGAAAGTGGCTATGTCGTGCAGCAGTATTTACCTGATACGTTAAAACATAAACAATATTACGAACCAAAAACAACA
AGTAAGTCAGAGCAGCAGTTCAAACAGATCTATGATAATATAAAACGACAAAAGCGTTGA

Upstream 100 bases:

>100_bases
TAGATATTTTCATTATATAGATGCTCCTTTTCAATAAATCAATTTTATCACATTTTTATTCGAAATAAGGTACACTTTAT
ATGAAAAGGGGAGGATTTTT

Downstream 100 bases:

>100_bases
TCGCTTTTGTCGTTTTGTATTAATTGAATTAAATATCTATAAAATGCTGAAATTACCAATAAAAATTCACAAAAGACAAT
AAGGTCGTCCTTACTGTTTA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MEPLAYRMRPNTIDDIIGQAHLVGPRGIIRRMVEAKRLSSMILYGPPGIGKTSIAQAIAGSTNLKFRQLNAVTNTKKDMQ
LIAEEAKMSGQVILLLDEIHRLDKGKQDFLLPHLEKGSIILIGATTSNPYHAINPAIRSRTQIFELYPHGDKEVKQALTR
ALNDDVNGYGKKDVKIDDDAVSHFVQSAAGDIRTALNALELAVLSAQGDPVHITLQDAKDCLQKPSFNFDADGDMHYDIM
SAFQKSIRGSDVDASLHYLARLIEGGDLPTIARRLLVISYEDVGLASPGAGARTLAAIESAERLGFPEARIPLAQAVIEL
CLSPKSNSGISAIDHALKDVKSGKVGAIPKHLKDAHYQGAKDLGNGVDYKYPHSFESGYVVQQYLPDTLKHKQYYEPKTT
SKSEQQFKQIYDNIKRQKR

Sequences:

>Translated_419_residues
MEPLAYRMRPNTIDDIIGQAHLVGPRGIIRRMVEAKRLSSMILYGPPGIGKTSIAQAIAGSTNLKFRQLNAVTNTKKDMQ
LIAEEAKMSGQVILLLDEIHRLDKGKQDFLLPHLEKGSIILIGATTSNPYHAINPAIRSRTQIFELYPHGDKEVKQALTR
ALNDDVNGYGKKDVKIDDDAVSHFVQSAAGDIRTALNALELAVLSAQGDPVHITLQDAKDCLQKPSFNFDADGDMHYDIM
SAFQKSIRGSDVDASLHYLARLIEGGDLPTIARRLLVISYEDVGLASPGAGARTLAAIESAERLGFPEARIPLAQAVIEL
CLSPKSNSGISAIDHALKDVKSGKVGAIPKHLKDAHYQGAKDLGNGVDYKYPHSFESGYVVQQYLPDTLKHKQYYEPKTT
SKSEQQFKQIYDNIKRQKR
>Mature_419_residues
MEPLAYRMRPNTIDDIIGQAHLVGPRGIIRRMVEAKRLSSMILYGPPGIGKTSIAQAIAGSTNLKFRQLNAVTNTKKDMQ
LIAEEAKMSGQVILLLDEIHRLDKGKQDFLLPHLEKGSIILIGATTSNPYHAINPAIRSRTQIFELYPHGDKEVKQALTR
ALNDDVNGYGKKDVKIDDDAVSHFVQSAAGDIRTALNALELAVLSAQGDPVHITLQDAKDCLQKPSFNFDADGDMHYDIM
SAFQKSIRGSDVDASLHYLARLIEGGDLPTIARRLLVISYEDVGLASPGAGARTLAAIESAERLGFPEARIPLAQAVIEL
CLSPKSNSGISAIDHALKDVKSGKVGAIPKHLKDAHYQGAKDLGNGVDYKYPHSFESGYVVQQYLPDTLKHKQYYEPKTT
SKSEQQFKQIYDNIKRQKR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=35.972850678733, Blast_Score=247, Evalue=1e-65,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=32.579185520362, Blast_Score=203, Evalue=3e-52,
Organism=Homo sapiens, GI4506491, Length=220, Percent_Identity=25.4545454545455, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI31881687, Length=220, Percent_Identity=25.4545454545455, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1787119, Length=413, Percent_Identity=37.5302663438257, Blast_Score=269, Evalue=2e-73,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=34.037558685446, Blast_Score=224, Evalue=3e-59,
Organism=Saccharomyces cerevisiae, GI6324039, Length=211, Percent_Identity=24.1706161137441, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI18859927, Length=219, Percent_Identity=28.7671232876712, Blast_Score=72, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46118; Mature: 46118

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPLAYRMRPNTIDDIIGQAHLVGPRGIIRRMVEAKRLSSMILYGPPGIGKTSIAQAIAG
CCCCCCCCCCCCHHHHHCCCEEECHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHC
STNLKFRQLNAVTNTKKDMQLIAEEAKMSGQVILLLDEIHRLDKGKQDFLLPHLEKGSII
CCCCEEEEHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCEE
LIGATTSNPYHAINPAIRSRTQIFELYPHGDKEVKQALTRALNDDVNGYGKKDVKIDDDA
EEECCCCCCCCCCCHHHHCCHHEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEECHHH
VSHFVQSAAGDIRTALNALELAVLSAQGDPVHITLQDAKDCLQKPSFNFDADGDMHYDIM
HHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHHHHHCCCCCCCCCCCCHHHHH
SAFQKSIRGSDVDASLHYLARLIEGGDLPTIARRLLVISYEDVGLASPGAGARTLAAIES
HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHH
AERLGFPEARIPLAQAVIELCLSPKSNSGISAIDHALKDVKSGKVGAIPKHLKDAHYQGA
HHHCCCCHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCH
KDLGNGVDYKYPHSFESGYVVQQYLPDTLKHKQYYEPKTTSKSEQQFKQIYDNIKRQKR
HHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEPLAYRMRPNTIDDIIGQAHLVGPRGIIRRMVEAKRLSSMILYGPPGIGKTSIAQAIAG
CCCCCCCCCCCCHHHHHCCCEEECHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHC
STNLKFRQLNAVTNTKKDMQLIAEEAKMSGQVILLLDEIHRLDKGKQDFLLPHLEKGSII
CCCCEEEEHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCEE
LIGATTSNPYHAINPAIRSRTQIFELYPHGDKEVKQALTRALNDDVNGYGKKDVKIDDDA
EEECCCCCCCCCCCHHHHCCHHEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEECHHH
VSHFVQSAAGDIRTALNALELAVLSAQGDPVHITLQDAKDCLQKPSFNFDADGDMHYDIM
HHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHHHHHCCCCCCCCCCCCHHHHH
SAFQKSIRGSDVDASLHYLARLIEGGDLPTIARRLLVISYEDVGLASPGAGARTLAAIES
HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHH
AERLGFPEARIPLAQAVIELCLSPKSNSGISAIDHALKDVKSGKVGAIPKHLKDAHYQGA
HHHCCCCHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCH
KDLGNGVDYKYPHSFESGYVVQQYLPDTLKHKQYYEPKTTSKSEQQFKQIYDNIKRQKR
HHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]