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The map label for this gene is dapB [H]

Identifier: 222151298

GI number: 222151298

Start: 1159906

End: 1160628

Strand: Direct

Name: dapB [H]

Synonym: MCCL_1051

Alternate gene names: 222151298

Gene position: 1159906-1160628 (Clockwise)

Preceding gene: 222151297

Following gene: 222151299

Centisome position: 55.17

GC content: 36.51

Gene sequence:

>723_bases
ATGAAGATTATTTTAAATGGTTACGGAGCTATGAATGAACGTGTGGCACATCTAGCTGAGAAGAGAGGACATGAAATAGC
AGGTATAATATTAAGTAAAAAAAAGTCAGCACCCTACCCTGTCTATACATTAGACAAATTAGAAATGCTTCCAGAAGCTG
ATGTTATCATAGACTTTTCTAATCCAGCCTTATCTATTCCATTATTAAAAAGTGATGTCGATATCCCTATTGTTATGGCT
ACAACGGGAGAAAAAGAATCAATTATCGAGCTGCTAGAATTAAAAAGTGTGCACTCTCCTGTATTTTTCAGTGCAAATAT
GAGTTACGGTGTCCATGTACTCACGGAACTCGTTAAATATGCAGTACCGTTGTTAACGAATATGGATATCGAACTGATTG
AACGTCATCATAATAAAAAGGTTGATGCGCCAAGCGGGACACTCGTTAAACTGTTAGATGCAATTACTTCAGAACGTTCA
TTAAACCCCATCTATGATCGCACAGACATTCATACCCCACGTAATAAAGATGATATTGGCATCAGTGTTGTACGTGGGGG
TACGATTGTCGGCGAACATGAAATATTATTTGCAGGACATGACGAAACAATTCAGATTACCCATCAGGCATTAAGTAAAG
ATATATTCGCCAATGGAAGTATCGATGTTGCAGAGAAATTAATTCAGAAAGAAAAAGGCTATTACACATTTGAAAATTTA
TAA

Upstream 100 bases:

>100_bases
CGAATGGTGAATTACGATTACCTTTAGTTCCAATGCTAGAACAAGATACAAAACAGCTGATTGAATTATATAATCGTATT
GCTAAAGGAAGTGATCTTTC

Downstream 100 bases:

>100_bases
TAAAGGAGCATAATAATGCAGGAATTTACAGCACAGGAAATTATACAATACATTAGTAACTCAGAAAAAAAGACACCAAT
TAAAGTTTATCTAAATGGAA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MKIILNGYGAMNERVAHLAEKRGHEIAGIILSKKKSAPYPVYTLDKLEMLPEADVIIDFSNPALSIPLLKSDVDIPIVMA
TTGEKESIIELLELKSVHSPVFFSANMSYGVHVLTELVKYAVPLLTNMDIELIERHHNKKVDAPSGTLVKLLDAITSERS
LNPIYDRTDIHTPRNKDDIGISVVRGGTIVGEHEILFAGHDETIQITHQALSKDIFANGSIDVAEKLIQKEKGYYTFENL

Sequences:

>Translated_240_residues
MKIILNGYGAMNERVAHLAEKRGHEIAGIILSKKKSAPYPVYTLDKLEMLPEADVIIDFSNPALSIPLLKSDVDIPIVMA
TTGEKESIIELLELKSVHSPVFFSANMSYGVHVLTELVKYAVPLLTNMDIELIERHHNKKVDAPSGTLVKLLDAITSERS
LNPIYDRTDIHTPRNKDDIGISVVRGGTIVGEHEILFAGHDETIQITHQALSKDIFANGSIDVAEKLIQKEKGYYTFENL
>Mature_240_residues
MKIILNGYGAMNERVAHLAEKRGHEIAGIILSKKKSAPYPVYTLDKLEMLPEADVIIDFSNPALSIPLLKSDVDIPIVMA
TTGEKESIIELLELKSVHSPVFFSANMSYGVHVLTELVKYAVPLLTNMDIELIERHHNKKVDAPSGTLVKLLDAITSERS
LNPIYDRTDIHTPRNKDDIGISVVRGGTIVGEHEILFAGHDETIQITHQALSKDIFANGSIDVAEKLIQKEKGYYTFENL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=221, Percent_Identity=33.4841628959276, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 26639; Mature: 26639

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIILNGYGAMNERVAHLAEKRGHEIAGIILSKKKSAPYPVYTLDKLEMLPEADVIIDFS
CEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEHHHHHHCCCCCEEEEEC
NPALSIPLLKSDVDIPIVMATTGEKESIIELLELKSVHSPVFFSANMSYGVHVLTELVKY
CCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
AVPLLTNMDIELIERHHNKKVDAPSGTLVKLLDAITSERSLNPIYDRTDIHTPRNKDDIG
HHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
ISVVRGGTIVGEHEILFAGHDETIQITHQALSKDIFANGSIDVAEKLIQKEKGYYTFENL
EEEEECCEEECCCEEEEECCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCC
>Mature Secondary Structure
MKIILNGYGAMNERVAHLAEKRGHEIAGIILSKKKSAPYPVYTLDKLEMLPEADVIIDFS
CEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEHHHHHHCCCCCEEEEEC
NPALSIPLLKSDVDIPIVMATTGEKESIIELLELKSVHSPVFFSANMSYGVHVLTELVKY
CCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
AVPLLTNMDIELIERHHNKKVDAPSGTLVKLLDAITSERSLNPIYDRTDIHTPRNKDDIG
HHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
ISVVRGGTIVGEHEILFAGHDETIQITHQALSKDIFANGSIDVAEKLIQKEKGYYTFENL
EEEEECCEEECCCEEEEECCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA