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The map label for this gene is yqxH [H]

Identifier: 222151227

GI number: 222151227

Start: 1075729

End: 1076241

Strand: Direct

Name: yqxH [H]

Synonym: MCCL_0978

Alternate gene names: 222151227

Gene position: 1075729-1076241 (Clockwise)

Preceding gene: 222151226

Following gene: 222151228

Centisome position: 51.17

GC content: 34.89

Gene sequence:

>513_bases
ATGTGGATAACAATCGGAGGAATGAATTTGGAAAATATCGAGATGCTTAAAATTTATTTATATGGAGGAGATATCAGATT
ACTACACTTCTTATGTATATTGATGCTAGTAGACATCGTGACAGGTATTGCTAAAGCGGTGTATAACAAGAATTTATGGT
CGAGAAAGTCATTATTCGGCTTTGCTAGAAAATTGATGGTATTCTGTATCATCGTATTGGCTAACGTGATTGATCAGATA
CTTCAATTAAATGGTGGATTGGTCATCGTCACAATTATGTTCTACATCGCCAACGAGGGGCTTTCTATTATTGAAAATTG
TGCACAGATGGGTGTGCTAGTACCTGCAAATATATCAGAGAAATTAGCAGTTATCTTAAGTGAGAATGATAAGCAGTCAA
TTACAACAGAAGTGAAAGAAGAATTCACAGCTAAACATTCAAAAGATTTGCCTGGGGGACAGGTTGATGTAAGCGTTAAA
GTTCAGTCAGAAAAAAACGAAGAAATAAATTAA

Upstream 100 bases:

>100_bases
GGAACAAAAACTTTCTATGTAAAACAAGATGTTGAACGTACTAAGTACAATGAAAATGGGGAAGTAGTCGTAGAAGAAAC
GTTATAAGAGGTGGTGAAAA

Downstream 100 bases:

>100_bases
GGCAGCTCACTATACGAAGAGATTAAACAAGAAATAAAGACTATAAAAGCAGAAAAGATATCTTAAACAGTTGGATCAAA
CATCTTATTTAAAAGGAGAA

Product: holin

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MWITIGGMNLENIEMLKIYLYGGDIRLLHFLCILMLVDIVTGIAKAVYNKNLWSRKSLFGFARKLMVFCIIVLANVIDQI
LQLNGGLVIVTIMFYIANEGLSIIENCAQMGVLVPANISEKLAVILSENDKQSITTEVKEEFTAKHSKDLPGGQVDVSVK
VQSEKNEEIN

Sequences:

>Translated_170_residues
MWITIGGMNLENIEMLKIYLYGGDIRLLHFLCILMLVDIVTGIAKAVYNKNLWSRKSLFGFARKLMVFCIIVLANVIDQI
LQLNGGLVIVTIMFYIANEGLSIIENCAQMGVLVPANISEKLAVILSENDKQSITTEVKEEFTAKHSKDLPGGQVDVSVK
VQSEKNEEIN
>Mature_170_residues
MWITIGGMNLENIEMLKIYLYGGDIRLLHFLCILMLVDIVTGIAKAVYNKNLWSRKSLFGFARKLMVFCIIVLANVIDQI
LQLNGGLVIVTIMFYIANEGLSIIENCAQMGVLVPANISEKLAVILSENDKQSITTEVKEEFTAKHSKDLPGGQVDVSVK
VQSEKNEEIN

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006480 [H]

Pfam domain/function: PF05105 Phage_holin_4 [H]

EC number: NA

Molecular weight: Translated: 18948; Mature: 18948

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWITIGGMNLENIEMLKIYLYGGDIRLLHFLCILMLVDIVTGIAKAVYNKNLWSRKSLFG
CEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FARKLMVFCIIVLANVIDQILQLNGGLVIVTIMFYIANEGLSIIENCAQMGVLVPANISE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCEECCCCCCC
KLAVILSENDKQSITTEVKEEFTAKHSKDLPGGQVDVSVKVQSEKNEEIN
CEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCC
>Mature Secondary Structure
MWITIGGMNLENIEMLKIYLYGGDIRLLHFLCILMLVDIVTGIAKAVYNKNLWSRKSLFG
CEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FARKLMVFCIIVLANVIDQILQLNGGLVIVTIMFYIANEGLSIIENCAQMGVLVPANISE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCEECCCCCCC
KLAVILSENDKQSITTEVKEEFTAKHSKDLPGGQVDVSVKVQSEKNEEIN
CEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1683402; 7704261; 8969508; 9384377 [H]