| Definition | Macrococcus caseolyticus JCSC5402, complete genome. |
|---|---|
| Accession | NC_011999 |
| Length | 2,102,324 |
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The map label for this gene is 222151170
Identifier: 222151170
GI number: 222151170
Start: 1012553
End: 1013803
Strand: Direct
Name: 222151170
Synonym: MCCL_0921
Alternate gene names: NA
Gene position: 1012553-1013803 (Clockwise)
Preceding gene: 222151169
Following gene: 222151171
Centisome position: 48.16
GC content: 36.37
Gene sequence:
>1251_bases ATGAGTAAATTGTCAAGACTTTATACAGAGAAGCAGATACAGATACTCAAGGACACGCAAAAACGTGATTGGTTCATGTT AATAAATCATGGTGCAAAACGTACAGGTAAAACGATACTGAATAATGATTTGTTCTTACGTGAGTTGATACGTGTCAGAG AGATAGCAGATAAAGAAGGATTAGAAACACCTCAGTACATTCTTGCAGGTGCAACGCTAGGAACGATACAGAAGAACGTA CTAATAGAACTTACGAATAAATATGGATTAGAATTCAAGTTTGATAAATACAATTCATTCATGTTATTCGGTGTGCAGGT CGTACAGACAGGTCATTCTAAAGTGAGTGGTATTGGTGCAATACGTGGTATGACTGCTTATGGTGCTTATATAAACGAAG CATCACTTGCACATGAAGAAGTATTCGATGAGATTAAATCACGTTGCAGTGGTTATGGTGCACGTATATTAGTTGATACG AACCCCGACCACCCCGAACATTGGCTGCTTAAAGATTATATTGAGAATACAGATGCTAAAGCAGGTATACTCAGCTATCA ATTTAAGCTCGACGACAACACTTTTTTGAATGAACGATATAAACAGTCAATCAAAGCGAGTACCCCATCAGGCATGTTCT ATGAGCGAAATATCAATGGTATGTGGGTAAGTGGTGACGGTGTTGTGTATTCTGACTTTGATTTGGAACAGAACACAATT ACTGCCGATGAACTAAACGAGATACCGATGAAGGAATACTTCGCGGGTGTCGATTGGGGGTACGAGCACTATGGTTCAAT CGTCGTTATGGCTAAAGATTTTAAAGAGAATCTATATCTTATTGAAGAACATGCACATCAACATAAATTTATTGATGAAT GGGCGATGATTGCAAAAGATATAGAAGAAAGATACGGAAAAATTCCTTTTTATTGTGATACTGCAAGAACTGAACATATC AAGAAGTTTAAAGATGAAGGGATTAACGCAGTTTACGCAAATAAAAATCGTATGGCAGGTGTAGAGCAGGTAGCTAAGTT ATTTAAACTTAATTGCCTGTTTGTTGTATATGATCGTATGGATAGATTTAAACAAGAAATATATAAGTATGTATGGAATA AAAACACTGGAGAACCTATTAAAGAGTTCGACGATGTATTAGACGCATTTAGATACGCTGTTTATACTCATACGTCCCAT CAAAAACCACTATCAACAAACGACTTGATGAACATTAAGAGTCTTTTTTAA
Upstream 100 bases:
>100_bases AAGTTGAATATCGAGAAACAAAGAAAAGAGTTGGCTAACGATCAATCACAAGAAGATAAGATTAAGCAATTACAAGATGC CATTACAGAAGTGATTAATC
Downstream 100 bases:
>100_bases GGAGGGAATATATTGAATTACAATTACAAAGAAAGTTATATCGCTAATGCGAATGATGACTTCACGATTAATAATGAAGA AGATATCTATAACGCAGACG
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Terminase; Phage Terminase Large Subunit PBSX Family; Phage Terminase Large Subunit Pbsx Family; PBSX Family Phage Terminase Large Subunit; Bsr Protein; Terminase Large Subunit; Prophage Terminase Large Subunit; Terminase; Phage Terminase Large Subunit ATPase; Phage-Related Terminase Large Subunit
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MSKLSRLYTEKQIQILKDTQKRDWFMLINHGAKRTGKTILNNDLFLRELIRVREIADKEGLETPQYILAGATLGTIQKNV LIELTNKYGLEFKFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMTAYGAYINEASLAHEEVFDEIKSRCSGYGARILVDT NPDHPEHWLLKDYIENTDAKAGILSYQFKLDDNTFLNERYKQSIKASTPSGMFYERNINGMWVSGDGVVYSDFDLEQNTI TADELNEIPMKEYFAGVDWGYEHYGSIVVMAKDFKENLYLIEEHAHQHKFIDEWAMIAKDIEERYGKIPFYCDTARTEHI KKFKDEGINAVYANKNRMAGVEQVAKLFKLNCLFVVYDRMDRFKQEIYKYVWNKNTGEPIKEFDDVLDAFRYAVYTHTSH QKPLSTNDLMNIKSLF
Sequences:
>Translated_416_residues MSKLSRLYTEKQIQILKDTQKRDWFMLINHGAKRTGKTILNNDLFLRELIRVREIADKEGLETPQYILAGATLGTIQKNV LIELTNKYGLEFKFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMTAYGAYINEASLAHEEVFDEIKSRCSGYGARILVDT NPDHPEHWLLKDYIENTDAKAGILSYQFKLDDNTFLNERYKQSIKASTPSGMFYERNINGMWVSGDGVVYSDFDLEQNTI TADELNEIPMKEYFAGVDWGYEHYGSIVVMAKDFKENLYLIEEHAHQHKFIDEWAMIAKDIEERYGKIPFYCDTARTEHI KKFKDEGINAVYANKNRMAGVEQVAKLFKLNCLFVVYDRMDRFKQEIYKYVWNKNTGEPIKEFDDVLDAFRYAVYTHTSH QKPLSTNDLMNIKSLF >Mature_415_residues SKLSRLYTEKQIQILKDTQKRDWFMLINHGAKRTGKTILNNDLFLRELIRVREIADKEGLETPQYILAGATLGTIQKNVL IELTNKYGLEFKFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMTAYGAYINEASLAHEEVFDEIKSRCSGYGARILVDTN PDHPEHWLLKDYIENTDAKAGILSYQFKLDDNTFLNERYKQSIKASTPSGMFYERNINGMWVSGDGVVYSDFDLEQNTIT ADELNEIPMKEYFAGVDWGYEHYGSIVVMAKDFKENLYLIEEHAHQHKFIDEWAMIAKDIEERYGKIPFYCDTARTEHIK KFKDEGINAVYANKNRMAGVEQVAKLFKLNCLFVVYDRMDRFKQEIYKYVWNKNTGEPIKEFDDVLDAFRYAVYTHTSHQ KPLSTNDLMNIKSLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48298; Mature: 48167
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLSRLYTEKQIQILKDTQKRDWFMLINHGAKRTGKTILNNDLFLRELIRVREIADKEG CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHCC LETPQYILAGATLGTIQKNVLIELTNKYGLEFKFDKYNSFMLFGVQVVQTGHSKVSGIGA CCCCHHHEECCHHHHHHHCEEEEEECCCCCEEEECCCCCEEEEEHHHHHCCCCHHHHHHH IRGMTAYGAYINEASLAHEEVFDEIKSRCSGYGARILVDTNPDHPEHWLLKDYIENTDAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC AGILSYQFKLDDNTFLNERYKQSIKASTPSGMFYERNINGMWVSGDGVVYSDFDLEQNTI CCEEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCEEEECCCCCCCCC TADELNEIPMKEYFAGVDWGYEHYGSIVVMAKDFKENLYLIEEHAHQHKFIDEWAMIAKD CHHHHHCCCHHHHHCCCCCCHHHHCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH IEERYGKIPFYCDTARTEHIKKFKDEGINAVYANKNRMAGVEQVAKLFKLNCLFVVYDRM HHHHHCCCCEEECCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHEEHHHHH DRFKQEIYKYVWNKNTGEPIKEFDDVLDAFRYAVYTHTSHQKPLSTNDLMNIKSLF HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCC >Mature Secondary Structure SKLSRLYTEKQIQILKDTQKRDWFMLINHGAKRTGKTILNNDLFLRELIRVREIADKEG CHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHCC LETPQYILAGATLGTIQKNVLIELTNKYGLEFKFDKYNSFMLFGVQVVQTGHSKVSGIGA CCCCHHHEECCHHHHHHHCEEEEEECCCCCEEEECCCCCEEEEEHHHHHCCCCHHHHHHH IRGMTAYGAYINEASLAHEEVFDEIKSRCSGYGARILVDTNPDHPEHWLLKDYIENTDAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC AGILSYQFKLDDNTFLNERYKQSIKASTPSGMFYERNINGMWVSGDGVVYSDFDLEQNTI CCEEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCEEEECCCCCCCCC TADELNEIPMKEYFAGVDWGYEHYGSIVVMAKDFKENLYLIEEHAHQHKFIDEWAMIAKD CHHHHHCCCHHHHHCCCCCCHHHHCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH IEERYGKIPFYCDTARTEHIKKFKDEGINAVYANKNRMAGVEQVAKLFKLNCLFVVYDRM HHHHHCCCCEEECCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHEEHHHHH DRFKQEIYKYVWNKNTGEPIKEFDDVLDAFRYAVYTHTSHQKPLSTNDLMNIKSLF HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA