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The map label for this gene is xerD [H]

Identifier: 222151103

GI number: 222151103

Start: 935176

End: 936195

Strand: Direct

Name: xerD [H]

Synonym: MCCL_0854

Alternate gene names: 222151103

Gene position: 935176-936195 (Clockwise)

Preceding gene: 222151102

Following gene: 222151105

Centisome position: 44.48

GC content: 28.53

Gene sequence:

>1020_bases
GTGTCTAAAAGATTAAGTTCAAGAAGGTTGAGAAAAATTGAGAAGGCAGGGGATTTCGAAAAAATTAAATCTATTGTTCT
TGAAGATAAAGAACTACAGAACTTATCTAGAGCAACTATCATTAATTACAATAAAGTATTTACTTCTTTAAGTATTTTCT
TTGATAATATTGATGATCCGTTCAAAATAACTGAAAAGCAAGCTAGGGAATACATTAGGTATTTAAAAAATGAACATGTA
CACTATAAAGATAAACTACATCATAAAAATGAAATTAGGGGACTTAAAGCAAGTACAATTAACACATATATAAAGTTGTG
TAAATCAATATATCAGACGTTAGTGGAATTAAACTATATTGAGAGTAACCCTTTTAAAGCTATTAAATGCTTAAAAAAAC
AAAATGAACGTATAAAAACGATACCACCAGAAGACATAAATAAGTTATTAAATTCATTAGATAAAAGCTACTATACAGAT
TTCAGGATGTTTACTGCTATACATGTGTTTCTAGATACATTCGGTAGAATAGATGAAGTATTAAATATAAAAATTACAGA
TATTGATTTTGACAAACGTTCTATTTACTTTCCTAATACAAAGAATAACGATGGTAGATATGTGATGTTCAGCTTAAAGA
CTAAGAAATTATTAGTAGAATTGATTGACGAAATGAAAGATTATAATAACGATTTCGTATTTTTAGCAGTTGATGGGGGT
AAATTCACTAACCAAGCCTTTAGAAATCAACTAAAAAAGTACTGTAAAGAATACAATATAAAGACAAATATCACACCTCA
TATGTTTAGGCATACCGCTTCAATGTTGTTTCTTGAAAATGGTGGGAACATTAGAGTACTACAAAAGATACTCGGCCATA
AAAAGTTAGCAACAACTGAAATATATGCACATGTTTCAGAAGACCTAATGACATTACAACAAGAAGATTATAGCCCATTA
GATCAAGTTCTAGGCAAACAAAAAAAGTACCACAGAGCGAGAAGTAAAAGATTAAAATAA

Upstream 100 bases:

>100_bases
ACTTCTCAATAGTTGAAAGATGTATGATATTGTAAGCTACAAATAAAAAACACTTTACTATTTAATTAAAATTATTTAAT
TATTAGTGAGGTGTTTTTTT

Downstream 100 bases:

>100_bases
CTAGAGTTGAATTTTAGGGAGAAGATACAGATGAACAATAATAAAGTTATTACATTTACGTTACACTATTGAGATTTAGT
GAAGAAGAACAGACAATTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MSKRLSSRRLRKIEKAGDFEKIKSIVLEDKELQNLSRATIINYNKVFTSLSIFFDNIDDPFKITEKQAREYIRYLKNEHV
HYKDKLHHKNEIRGLKASTINTYIKLCKSIYQTLVELNYIESNPFKAIKCLKKQNERIKTIPPEDINKLLNSLDKSYYTD
FRMFTAIHVFLDTFGRIDEVLNIKITDIDFDKRSIYFPNTKNNDGRYVMFSLKTKKLLVELIDEMKDYNNDFVFLAVDGG
KFTNQAFRNQLKKYCKEYNIKTNITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHVSEDLMTLQQEDYSPL
DQVLGKQKKYHRARSKRLK

Sequences:

>Translated_339_residues
MSKRLSSRRLRKIEKAGDFEKIKSIVLEDKELQNLSRATIINYNKVFTSLSIFFDNIDDPFKITEKQAREYIRYLKNEHV
HYKDKLHHKNEIRGLKASTINTYIKLCKSIYQTLVELNYIESNPFKAIKCLKKQNERIKTIPPEDINKLLNSLDKSYYTD
FRMFTAIHVFLDTFGRIDEVLNIKITDIDFDKRSIYFPNTKNNDGRYVMFSLKTKKLLVELIDEMKDYNNDFVFLAVDGG
KFTNQAFRNQLKKYCKEYNIKTNITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHVSEDLMTLQQEDYSPL
DQVLGKQKKYHRARSKRLK
>Mature_338_residues
SKRLSSRRLRKIEKAGDFEKIKSIVLEDKELQNLSRATIINYNKVFTSLSIFFDNIDDPFKITEKQAREYIRYLKNEHVH
YKDKLHHKNEIRGLKASTINTYIKLCKSIYQTLVELNYIESNPFKAIKCLKKQNERIKTIPPEDINKLLNSLDKSYYTDF
RMFTAIHVFLDTFGRIDEVLNIKITDIDFDKRSIYFPNTKNNDGRYVMFSLKTKKLLVELIDEMKDYNNDFVFLAVDGGK
FTNQAFRNQLKKYCKEYNIKTNITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHVSEDLMTLQQEDYSPLD
QVLGKQKKYHRARSKRLK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=216, Percent_Identity=22.6851851851852, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789261, Length=231, Percent_Identity=23.3766233766234, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40153; Mature: 40022

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRLSSRRLRKIEKAGDFEKIKSIVLEDKELQNLSRATIINYNKVFTSLSIFFDNIDDP
CCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCC
FKITEKQAREYIRYLKNEHVHYKDKLHHKNEIRGLKASTINTYIKLCKSIYQTLVELNYI
HHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
ESNPFKAIKCLKKQNERIKTIPPEDINKLLNSLDKSYYTDFRMFTAIHVFLDTFGRIDEV
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNIKITDIDFDKRSIYFPNTKNNDGRYVMFSLKTKKLLVELIDEMKDYNNDFVFLAVDGG
HEEEEEEECCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCC
KFTNQAFRNQLKKYCKEYNIKTNITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTE
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHCCCHHHHHH
IYAHVSEDLMTLQQEDYSPLDQVLGKQKKYHRARSKRLK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKRLSSRRLRKIEKAGDFEKIKSIVLEDKELQNLSRATIINYNKVFTSLSIFFDNIDDP
CCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCC
FKITEKQAREYIRYLKNEHVHYKDKLHHKNEIRGLKASTINTYIKLCKSIYQTLVELNYI
HHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
ESNPFKAIKCLKKQNERIKTIPPEDINKLLNSLDKSYYTDFRMFTAIHVFLDTFGRIDEV
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNIKITDIDFDKRSIYFPNTKNNDGRYVMFSLKTKKLLVELIDEMKDYNNDFVFLAVDGG
HEEEEEEECCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCC
KFTNQAFRNQLKKYCKEYNIKTNITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTE
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHCCCHHHHHH
IYAHVSEDLMTLQQEDYSPLDQVLGKQKKYHRARSKRLK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]