Click here to switch to the map view.

The map label for this gene is gapR [H]

Identifier: 222150770

GI number: 222150770

Start: 552198

End: 553220

Strand: Direct

Name: gapR [H]

Synonym: MCCL_0520

Alternate gene names: 222150770

Gene position: 552198-553220 (Clockwise)

Preceding gene: 222150768

Following gene: 222150771

Centisome position: 26.27

GC content: 41.06

Gene sequence:

>1023_bases
GTGTATTTGAATGCTTTGTTTGAGGTTCAAAAGAAGCTTGTCCCTGATTTAGTTGACAAGATGTACCGAAGATTTCAAAT
ACTCTCTGCAATTGAGCTGCATCAGCCGATTGGTAGGCGGGCACTTAGTGAAACGGTTCACCTCAGTGAACGTATCCTTA
GAACTGAGACGGATATATTAAAAACACAAGGTTTAATTACCATTACATCTAAAGGAATGTCGGTAACCGAAAGTGGCGAA
GACGTGCTTTATAAGATGAAAGCTTCTATGGATAGTTTGACTAGGCTAGAACATGTTGCGCATGCAATTGAAAGTCGTTT
TGCTATTCAAAAGGTGATCGTCGTAAGTGGTGATGCAGATATCGATGATGAAGTGAAACTTAGGATGGGTCAGGCGACAA
GCGAGTATCTAGAAAGTTGTTTTGAAGATGGGACTAAAGTAACTGTAACTGGAGGATCGACAATGGCGTACATTGCACGT
TCGATGCGTCCTACAGATAAATCTATCAATTTTATTCCTGCGCGTGGCGGGTTAGGTGAAGAAGTTTCTTTTCAAGCTAA
TGCGATAGCACATTTGATGGCTGATCAGACAGGTGGGACGTTCGAAGTTCTCTATGTTCCTGATCAGGTAAGTGAAGCAG
GCTATAATGCACTTCTTGAAGAACAGTCTGTTAGACGTGTGTTACAGCATATTCAACAGGCAGATATTGTGCTTCACGGT
ATTGGATCAGCTCAGAAGATGGCTGAAAGAAGACATTCAACACCACAAGTTATGGAGAAGCTGATGGATGGCAATGCAGT
TGCCGAAGCTTTCGGTTATTATTTTGATGAGGAAGGCAACATCGTTTATCGTGTAAGAACAATTGGTATACATCTTGATG
ATCTTACTGAAGATAAAAGAATCATTGCTGTAGCAGGAGGTAATAGTAAGAAAGAAGCGATAGCTTCCTATTTGAAGGTA
GCTCCGAAACATACGGTATTGATTACAGATTCAGTTGTAGGTAACTGGCTGATGAATCAGTAG

Upstream 100 bases:

>100_bases
TACTTGCTTACTATAAGTGGACTTGCTATTATGTATGTGTAACGTAAGTTACTTTTTGACCCGAGTGGGACGAATTTCGT
CCACAACTAATTGAGGAGGG

Downstream 100 bases:

>100_bases
ATACTAAGAAAAACTAAATATTATAAGTGTAATATTTTTATTTTTCAGTGTAATTTGATTATAATAAGGATGTATGATGA
ATTTAGTAGTAAAGGGTATA

Product: transcriptional regulator GapR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MYLNALFEVQKKLVPDLVDKMYRRFQILSAIELHQPIGRRALSETVHLSERILRTETDILKTQGLITITSKGMSVTESGE
DVLYKMKASMDSLTRLEHVAHAIESRFAIQKVIVVSGDADIDDEVKLRMGQATSEYLESCFEDGTKVTVTGGSTMAYIAR
SMRPTDKSINFIPARGGLGEEVSFQANAIAHLMADQTGGTFEVLYVPDQVSEAGYNALLEEQSVRRVLQHIQQADIVLHG
IGSAQKMAERRHSTPQVMEKLMDGNAVAEAFGYYFDEEGNIVYRVRTIGIHLDDLTEDKRIIAVAGGNSKKEAIASYLKV
APKHTVLITDSVVGNWLMNQ

Sequences:

>Translated_340_residues
MYLNALFEVQKKLVPDLVDKMYRRFQILSAIELHQPIGRRALSETVHLSERILRTETDILKTQGLITITSKGMSVTESGE
DVLYKMKASMDSLTRLEHVAHAIESRFAIQKVIVVSGDADIDDEVKLRMGQATSEYLESCFEDGTKVTVTGGSTMAYIAR
SMRPTDKSINFIPARGGLGEEVSFQANAIAHLMADQTGGTFEVLYVPDQVSEAGYNALLEEQSVRRVLQHIQQADIVLHG
IGSAQKMAERRHSTPQVMEKLMDGNAVAEAFGYYFDEEGNIVYRVRTIGIHLDDLTEDKRIIAVAGGNSKKEAIASYLKV
APKHTVLITDSVVGNWLMNQ
>Mature_340_residues
MYLNALFEVQKKLVPDLVDKMYRRFQILSAIELHQPIGRRALSETVHLSERILRTETDILKTQGLITITSKGMSVTESGE
DVLYKMKASMDSLTRLEHVAHAIESRFAIQKVIVVSGDADIDDEVKLRMGQATSEYLESCFEDGTKVTVTGGSTMAYIAR
SMRPTDKSINFIPARGGLGEEVSFQANAIAHLMADQTGGTFEVLYVPDQVSEAGYNALLEEQSVRRVLQHIQQADIVLHG
IGSAQKMAERRHSTPQVMEKLMDGNAVAEAFGYYFDEEGNIVYRVRTIGIHLDDLTEDKRIIAVAGGNSKKEAIASYLKV
APKHTVLITDSVVGNWLMNQ

Specific function: Represses the transcription of the gapA gene [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=229, Percent_Identity=28.82096069869, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 37737; Mature: 37737

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLNALFEVQKKLVPDLVDKMYRRFQILSAIELHQPIGRRALSETVHLSERILRTETDIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTQGLITITSKGMSVTESGEDVLYKMKASMDSLTRLEHVAHAIESRFAIQKVIVVSGDAD
HHCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCC
IDDEVKLRMGQATSEYLESCFEDGTKVTVTGGSTMAYIARSMRPTDKSINFIPARGGLGE
CCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCEEEECCCCCCC
EVSFQANAIAHLMADQTGGTFEVLYVPDQVSEAGYNALLEEQSVRRVLQHIQQADIVLHG
CCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEC
IGSAQKMAERRHSTPQVMEKLMDGNAVAEAFGYYFDEEGNIVYRVRTIGIHLDDLTEDKR
CCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCEECCCCCEEEEEEEEEEEECCCCCCCE
IIAVAGGNSKKEAIASYLKVAPKHTVLITDSVVGNWLMNQ
EEEEECCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCC
>Mature Secondary Structure
MYLNALFEVQKKLVPDLVDKMYRRFQILSAIELHQPIGRRALSETVHLSERILRTETDIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTQGLITITSKGMSVTESGEDVLYKMKASMDSLTRLEHVAHAIESRFAIQKVIVVSGDAD
HHCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCC
IDDEVKLRMGQATSEYLESCFEDGTKVTVTGGSTMAYIARSMRPTDKSINFIPARGGLGE
CCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCEEEECCCCCCC
EVSFQANAIAHLMADQTGGTFEVLYVPDQVSEAGYNALLEEQSVRRVLQHIQQADIVLHG
CCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEC
IGSAQKMAERRHSTPQVMEKLMDGNAVAEAFGYYFDEEGNIVYRVRTIGIHLDDLTEDKR
CCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCEECCCCCEEEEEEEEEEEECCCCCCCE
IIAVAGGNSKKEAIASYLKVAPKHTVLITDSVVGNWLMNQ
EEEEECCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]