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The map label for this gene is 222111079

Identifier: 222111079

GI number: 222111079

Start: 2008778

End: 2010085

Strand: Direct

Name: 222111079

Synonym: Dtpsy_1886

Alternate gene names: NA

Gene position: 2008778-2010085 (Clockwise)

Preceding gene: 222111078

Following gene: 222111080

Centisome position: 52.91

GC content: 65.6

Gene sequence:

>1308_bases
ATGCTGTACACCCTCTACGAGACCCAGCGCTCCCTCATGGAGCCCTTCGCCGACCTGGCGCAGGCCGCCGCCAAGTTCTA
CAGCAACCCGCTGTGGCCGTTCAGCGAGACGCAACTGGCCCGTCGCATCTCGGCGGGCTATGAACTGCTGTACCGCCTGT
GCAAGGACTACGAGAAACCCGAGTTCGGCATCAGCACCGTGGACGTGGATGGCGTGAGCGTGGCCATCCATGAGCGCGTG
GACGTCGACAAGCCTTTCTGCGAACTGCGCCGCTTCAAGCGGTTTTCGGACGACCCGGCCACCTTGCTCAAGCTCAAGGG
GCAGCCCGTGGTGCTGATCGTGGCGCCGTTGTCGGGCCACTACGCCACGCTGCTGCGCGACACCGTGCGCTCCATGCTGG
AGAGCCACAAGGTCTACATCACCGACTGGAAGAACGCGCGCATGGTGCCGCTGCAGGAGGGCGAGTTCCACCTGGACGAC
TATGTGAACTACGTGCAGGAGTTCATCCGCTACCTGCAGGGCCAATACGGTAACTGCCATGTGATGAGCGTCTGCCAGCC
CACCGTGCCGGTACTGGCCGCCGTCTCGCTGATGGCCAGCCGCGGTGAGACCACGCCACTGTCCATGACCATGATGGGCG
GCCCCATCGATGCGCGCCGCTCACCCACGGCGGTGAACAACCTGGCCACCCAACGCAGCTTGGAGTGGTTCGAGAACAAC
GTCATCTACCGCGTACCCAGCAACTTCCCCGGCGCCGGCCGCCGCGTGTACCCGGGCTTTCTGCAGCACATGGGCTTCGT
GGCCATGAACCCGGACCGGCACGCCAGCAGCCACTACGATTACTTCAAGAACCTCATCAAGGGCGATGACGCCAGCGCCG
AGGCCCACCGCAAGTTCTACGACGAATACAACGCCGTGCTCGACATGGATGCCGACTATTACCTGGAGACCATCAAGACC
GTCTTCCAGGACTACAGCCTGGTCAACGGCACCTGGGACGTGCGCTCGCCGGACGGCGCGGTGGAGCGCGTGCGCCCCCA
GGACATCACCCAGACCGCGCTGCTGACCATCGAAGGCGAGCTCGACGACATCTCCGGCTCCGGCCAGACCGAGGCGGCGC
AGGATCTGTGCACCGGCATCGCCGCGGACCGGCGCAACCACCTCGAGGTGAAGGGCGCGGGCCACTACGGCATTTTCAGC
GGCCGCCGCTGGCGCGAGCTAGTCTACCCGCAGGTGCGCGACTTCATCCGTGCCAACCAGTCCGCCCAGCCCACGTCACG
CCCCCGCCGCGCACGCAGCGCCGCCTGA

Upstream 100 bases:

>100_bases
CGCCAATGTCGCGCGCGGGACACTGAATGCGTAGTTGCACGACACGCAAGCAAATGCAACTGCTGATATATTGCACTGCA
ACATAACTTGGTCCTGCCCC

Downstream 100 bases:

>100_bases
CGCCGGCCATGACCTCCCCCGCAGCGCAGCAGGCGCTCGTTGAGCGCATTGACGCGGCCCTGCCCCAGACCCAGTGCACG
CGCTGCGGCTACCCTGACTG

Product: polyhydroxyalkanoate depolymerase, intracellular

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly(3-Hydroxybutyrate) Depolymerase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase Fold Protein; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; PHB De-Polymerase Domain Protein; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MLYTLYETQRSLMEPFADLAQAAAKFYSNPLWPFSETQLARRISAGYELLYRLCKDYEKPEFGISTVDVDGVSVAIHERV
DVDKPFCELRRFKRFSDDPATLLKLKGQPVVLIVAPLSGHYATLLRDTVRSMLESHKVYITDWKNARMVPLQEGEFHLDD
YVNYVQEFIRYLQGQYGNCHVMSVCQPTVPVLAAVSLMASRGETTPLSMTMMGGPIDARRSPTAVNNLATQRSLEWFENN
VIYRVPSNFPGAGRRVYPGFLQHMGFVAMNPDRHASSHYDYFKNLIKGDDASAEAHRKFYDEYNAVLDMDADYYLETIKT
VFQDYSLVNGTWDVRSPDGAVERVRPQDITQTALLTIEGELDDISGSGQTEAAQDLCTGIAADRRNHLEVKGAGHYGIFS
GRRWRELVYPQVRDFIRANQSAQPTSRPRRARSAA

Sequences:

>Translated_435_residues
MLYTLYETQRSLMEPFADLAQAAAKFYSNPLWPFSETQLARRISAGYELLYRLCKDYEKPEFGISTVDVDGVSVAIHERV
DVDKPFCELRRFKRFSDDPATLLKLKGQPVVLIVAPLSGHYATLLRDTVRSMLESHKVYITDWKNARMVPLQEGEFHLDD
YVNYVQEFIRYLQGQYGNCHVMSVCQPTVPVLAAVSLMASRGETTPLSMTMMGGPIDARRSPTAVNNLATQRSLEWFENN
VIYRVPSNFPGAGRRVYPGFLQHMGFVAMNPDRHASSHYDYFKNLIKGDDASAEAHRKFYDEYNAVLDMDADYYLETIKT
VFQDYSLVNGTWDVRSPDGAVERVRPQDITQTALLTIEGELDDISGSGQTEAAQDLCTGIAADRRNHLEVKGAGHYGIFS
GRRWRELVYPQVRDFIRANQSAQPTSRPRRARSAA
>Mature_435_residues
MLYTLYETQRSLMEPFADLAQAAAKFYSNPLWPFSETQLARRISAGYELLYRLCKDYEKPEFGISTVDVDGVSVAIHERV
DVDKPFCELRRFKRFSDDPATLLKLKGQPVVLIVAPLSGHYATLLRDTVRSMLESHKVYITDWKNARMVPLQEGEFHLDD
YVNYVQEFIRYLQGQYGNCHVMSVCQPTVPVLAAVSLMASRGETTPLSMTMMGGPIDARRSPTAVNNLATQRSLEWFENN
VIYRVPSNFPGAGRRVYPGFLQHMGFVAMNPDRHASSHYDYFKNLIKGDDASAEAHRKFYDEYNAVLDMDADYYLETIKT
VFQDYSLVNGTWDVRSPDGAVERVRPQDITQTALLTIEGELDDISGSGQTEAAQDLCTGIAADRRNHLEVKGAGHYGIFS
GRRWRELVYPQVRDFIRANQSAQPTSRPRRARSAA

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.1.-

Molecular weight: Translated: 49359; Mature: 49359

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYTLYETQRSLMEPFADLAQAAAKFYSNPLWPFSETQLARRISAGYELLYRLCKDYEKP
CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
EFGISTVDVDGVSVAIHERVDVDKPFCELRRFKRFSDDPATLLKLKGQPVVLIVAPLSGH
CCCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHEEECCCCEEEEEECCCCH
YATLLRDTVRSMLESHKVYITDWKNARMVPLQEGEFHLDDYVNYVQEFIRYLQGQYGNCH
HHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
VMSVCQPTVPVLAAVSLMASRGETTPLSMTMMGGPIDARRSPTAVNNLATQRSLEWFENN
EEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
VIYRVPSNFPGAGRRVYPGFLQHMGFVAMNPDRHASSHYDYFKNLIKGDDASAEAHRKFY
EEEECCCCCCCCCCCCCHHHHHHCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
DEYNAVLDMDADYYLETIKTVFQDYSLVNGTWDVRSPDGAVERVRPQDITQTALLTIEGE
HHHHHEEECCHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHCCCCCCCCCEEEEEEECC
LDDISGSGQTEAAQDLCTGIAADRRNHLEVKGAGHYGIFSGRRWRELVYPQVRDFIRANQ
CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
SAQPTSRPRRARSAA
CCCCCCCCCHHCCCC
>Mature Secondary Structure
MLYTLYETQRSLMEPFADLAQAAAKFYSNPLWPFSETQLARRISAGYELLYRLCKDYEKP
CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
EFGISTVDVDGVSVAIHERVDVDKPFCELRRFKRFSDDPATLLKLKGQPVVLIVAPLSGH
CCCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHEEECCCCEEEEEECCCCH
YATLLRDTVRSMLESHKVYITDWKNARMVPLQEGEFHLDDYVNYVQEFIRYLQGQYGNCH
HHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
VMSVCQPTVPVLAAVSLMASRGETTPLSMTMMGGPIDARRSPTAVNNLATQRSLEWFENN
EEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
VIYRVPSNFPGAGRRVYPGFLQHMGFVAMNPDRHASSHYDYFKNLIKGDDASAEAHRKFY
EEEECCCCCCCCCCCCCHHHHHHCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
DEYNAVLDMDADYYLETIKTVFQDYSLVNGTWDVRSPDGAVERVRPQDITQTALLTIEGE
HHHHHEEECCHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHCCCCCCCCCEEEEEEECC
LDDISGSGQTEAAQDLCTGIAADRRNHLEVKGAGHYGIFSGRRWRELVYPQVRDFIRANQ
CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
SAQPTSRPRRARSAA
CCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA