| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is prpE [H]
Identifier: 222111018
GI number: 222111018
Start: 1938011
End: 1939906
Strand: Direct
Name: prpE [H]
Synonym: Dtpsy_1825
Alternate gene names: 222111018
Gene position: 1938011-1939906 (Clockwise)
Preceding gene: 222111017
Following gene: 222111023
Centisome position: 51.05
GC content: 68.57
Gene sequence:
>1896_bases ATGGCCGCCGACTATGCCGACTTCTACCGCCGCTCCATCGACGAGCGCGACGCCTTCTGGGCCGAGCAGGCTCGCCTGAT CGACTGGCAGCAGCCGCCGCAGCAGATCTGCGACTGGAGCAACCCGCCGTTCGCCAAGTGGTTCGTGGGCGGCACCACCA ACCTGTGCCACAACGCGGTGGACCGCCACCTGGCCGAGCGCCCGCTGCAAAACGCGCTCGTGGCCATCTCCACCGAAACC AATACCGAGCGCGCCTACACCTACGCCGAGCTGCACCAGGAAGTGCAGCGCATGGCCGCCAGCCTGCAGACGCTGGGCGT GCGCCAGGGCGACCGCGTGCTGATCTACATGCCCATGATTGCCGAGGCGGCGTTCGCCATGCTGGCGTGCGCGCGCATCG GGGCCATCCATTCGGTGGTGTTCGGCGGGTTCGCGTCGTCGTCGCTGGCTTCGCGCATCGAGGACGCCGAGCCCACGGTG ATCGTGAGCGCCGATGCGGGCTCGCGCGGCGGCAAGGTGGTGCCCTACAAGCCGCTGCTGGACGAGGCCATCGAACTGTC GGCCCACAAGCCCGCGGCCGTGCTGTTGGTGGACCGGGGCCTCGCGCCCGCCGCCATGCGCGCGGGCCGCGACCACGACT GGGCGGCACTGCGCGCGCGGCACATGGATGCACAGGTGCCCTGCATCTGGGTGGACGCCACGCAGCCCAGCTACACCCTG TACACCAGCGGCACCACCGGCAAGCCCAAGGGCGTGCAGCGGGACACGGGCGGCTACACCGTGGCGCTGGCGTCCAGCAT GCGCCACATCTTCGAGGCACAGCCGGGCGACACCTATTTCTGTACCAGCGACATCGGCTGGGTGGTGGGCCACAGCTACA TCATCTACGGCCCGCTGATTGCCGGCATGACCACCATCCTGTACGAAGGCCTGCCGGTGCGGCCCGACGCGGGCATCTGG TGGAGCATCGTCGAGAAATACCGGGTCACGCACATGTTCTCGGCCCCCACGGCGGTGCGCGTGCTCAAGAAGCAAGACCC GGCCTACCTGAAGAAATACGACATCCGCAGCCTGAAGGCGCTGTGGCTGGCGGGCGAGCCCCTGGACGAGCCCACGGCGC AGTGGATCAGCGACGCGCTGCAGGTGCCCATCATCGACAACTACTGGCAGACCGAGACCGGCTGGCCCATCCTCACGCTG TGCAACGGCGTGCAGAAGCAAACCTCGCGCTTCGGCAGCCCGGGCAAGGCCGTGTACGGCTACAACGTCCAGCTGATCGA CGAGGCCACGGGCGAGGAGCTGACCCAGCCCAACCAGAAGGGAGTGGTGGCCATCGAGGGGCCGCTGCCCCCTGGCTGCC TGCAGACCGTGTGGCGCAACGATGATCGCTTCGTCAACACCTACTGGAAGAGCATTCCCGGCCGGCTGGTCTACAGCACG TTCGACTGGGGCATCCGCGATGCCGACGGCTACTACTTCATCCTGGGCCGCACCGACGACGTGATCAACGTGGCCGGCCA CCGCCTGGGCACGCGCGAGATCGAGGAATGCATCGCCGGCCACCCCAATGTGGCCGAGGTGGCCGTGGTGGGCGTGGCCG ACGCGCTGAAAGGCCAGGTCGCGATGGCCTTCGCGGTGCCGCGCGATGCCTCGGGCCTCACCGACGAGGCCGCGCGCCTG AAGCTGGAAGGCGAGGTGATGAAGCAGGTCGATACCCAACTGGGCGCCGTGGCCCGCCCGGCGCGCGTGCTGTTCGTGAC GATGCTGCCCAAGACCCGCAGCGGCAAGCTGCTGCGCCGCGCCCTGCAGGCCGTGGCCGAGCGCCGCGACACGGGCGACC TGACCACCATGGAAGACCCCGTGGCACTGCAGCAAATCAAGGAACTGCTGGGCTGA
Upstream 100 bases:
>100_bases CCGCGTCAGCTTCCCGCAAGCGCGGCATGAATAATTATGAATTTTGGATAACCACCGACCCGCGCCACGTCGGCGCGGAG GATTCCAAGGAGACAGCACC
Downstream 100 bases:
>100_bases CGCGCAGGAATTTGCTATCGATTTAATAGCTTTCAGCGCTTGTTGGACGGGCGCTGGAAGCTTTTTTATTGCTTGATTCG ATACGCCATCAAGCGGCTAT
Product: propionyl-CoA synthetase
Products: NA
Alternate protein names: Propionyl-CoA synthetase [H]
Number of amino acids: Translated: 631; Mature: 630
Protein sequence:
>631_residues MAADYADFYRRSIDERDAFWAEQARLIDWQQPPQQICDWSNPPFAKWFVGGTTNLCHNAVDRHLAERPLQNALVAISTET NTERAYTYAELHQEVQRMAASLQTLGVRQGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASSSLASRIEDAEPTV IVSADAGSRGGKVVPYKPLLDEAIELSAHKPAAVLLVDRGLAPAAMRAGRDHDWAALRARHMDAQVPCIWVDATQPSYTL YTSGTTGKPKGVQRDTGGYTVALASSMRHIFEAQPGDTYFCTSDIGWVVGHSYIIYGPLIAGMTTILYEGLPVRPDAGIW WSIVEKYRVTHMFSAPTAVRVLKKQDPAYLKKYDIRSLKALWLAGEPLDEPTAQWISDALQVPIIDNYWQTETGWPILTL CNGVQKQTSRFGSPGKAVYGYNVQLIDEATGEELTQPNQKGVVAIEGPLPPGCLQTVWRNDDRFVNTYWKSIPGRLVYST FDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEECIAGHPNVAEVAVVGVADALKGQVAMAFAVPRDASGLTDEAARL KLEGEVMKQVDTQLGAVARPARVLFVTMLPKTRSGKLLRRALQAVAERRDTGDLTTMEDPVALQQIKELLG
Sequences:
>Translated_631_residues MAADYADFYRRSIDERDAFWAEQARLIDWQQPPQQICDWSNPPFAKWFVGGTTNLCHNAVDRHLAERPLQNALVAISTET NTERAYTYAELHQEVQRMAASLQTLGVRQGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASSSLASRIEDAEPTV IVSADAGSRGGKVVPYKPLLDEAIELSAHKPAAVLLVDRGLAPAAMRAGRDHDWAALRARHMDAQVPCIWVDATQPSYTL YTSGTTGKPKGVQRDTGGYTVALASSMRHIFEAQPGDTYFCTSDIGWVVGHSYIIYGPLIAGMTTILYEGLPVRPDAGIW WSIVEKYRVTHMFSAPTAVRVLKKQDPAYLKKYDIRSLKALWLAGEPLDEPTAQWISDALQVPIIDNYWQTETGWPILTL CNGVQKQTSRFGSPGKAVYGYNVQLIDEATGEELTQPNQKGVVAIEGPLPPGCLQTVWRNDDRFVNTYWKSIPGRLVYST FDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEECIAGHPNVAEVAVVGVADALKGQVAMAFAVPRDASGLTDEAARL KLEGEVMKQVDTQLGAVARPARVLFVTMLPKTRSGKLLRRALQAVAERRDTGDLTTMEDPVALQQIKELLG >Mature_630_residues AADYADFYRRSIDERDAFWAEQARLIDWQQPPQQICDWSNPPFAKWFVGGTTNLCHNAVDRHLAERPLQNALVAISTETN TERAYTYAELHQEVQRMAASLQTLGVRQGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASSSLASRIEDAEPTVI VSADAGSRGGKVVPYKPLLDEAIELSAHKPAAVLLVDRGLAPAAMRAGRDHDWAALRARHMDAQVPCIWVDATQPSYTLY TSGTTGKPKGVQRDTGGYTVALASSMRHIFEAQPGDTYFCTSDIGWVVGHSYIIYGPLIAGMTTILYEGLPVRPDAGIWW SIVEKYRVTHMFSAPTAVRVLKKQDPAYLKKYDIRSLKALWLAGEPLDEPTAQWISDALQVPIIDNYWQTETGWPILTLC NGVQKQTSRFGSPGKAVYGYNVQLIDEATGEELTQPNQKGVVAIEGPLPPGCLQTVWRNDDRFVNTYWKSIPGRLVYSTF DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEECIAGHPNVAEVAVVGVADALKGQVAMAFAVPRDASGLTDEAARLK LEGEVMKQVDTQLGAVARPARVLFVTMLPKTRSGKLLRRALQAVAERRDTGDLTTMEDPVALQQIKELLG
Specific function: Catalyzes the synthesis of propionyl-CoA from propionate and CoA. Also converts acetate to acetyl-CoA but with a lower specific activity [H]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI13375727, Length=635, Percent_Identity=42.2047244094488, Blast_Score=506, Evalue=1e-143, Organism=Homo sapiens, GI8923896, Length=659, Percent_Identity=37.1775417298938, Blast_Score=410, Evalue=1e-114, Organism=Homo sapiens, GI28416953, Length=631, Percent_Identity=39.1442155309033, Blast_Score=409, Evalue=1e-114, Organism=Homo sapiens, GI253970489, Length=672, Percent_Identity=36.4583333333333, Blast_Score=405, Evalue=1e-113, Organism=Homo sapiens, GI38505220, Length=589, Percent_Identity=27.3344651952462, Blast_Score=182, Evalue=1e-45, Organism=Homo sapiens, GI122937307, Length=570, Percent_Identity=27.3684210526316, Blast_Score=169, Evalue=1e-41, Organism=Homo sapiens, GI42544132, Length=526, Percent_Identity=26.2357414448669, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI115511026, Length=544, Percent_Identity=27.3897058823529, Blast_Score=167, Evalue=4e-41, Organism=Homo sapiens, GI58082049, Length=528, Percent_Identity=26.5151515151515, Blast_Score=142, Evalue=9e-34, Organism=Homo sapiens, GI157311624, Length=530, Percent_Identity=26.4150943396226, Blast_Score=140, Evalue=5e-33, Organism=Homo sapiens, GI157311622, Length=530, Percent_Identity=26.4150943396226, Blast_Score=140, Evalue=5e-33, Organism=Homo sapiens, GI31982927, Length=653, Percent_Identity=23.583460949464, Blast_Score=138, Evalue=2e-32, Organism=Homo sapiens, GI195947378, Length=440, Percent_Identity=23.1818181818182, Blast_Score=96, Evalue=8e-20, Organism=Homo sapiens, GI42544134, Length=358, Percent_Identity=22.6256983240223, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI187761345, Length=398, Percent_Identity=23.1155778894472, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI187761343, Length=398, Percent_Identity=23.1155778894472, Blast_Score=75, Evalue=2e-13, Organism=Escherichia coli, GI1786529, Length=626, Percent_Identity=62.9392971246006, Blast_Score=821, Evalue=0.0, Organism=Escherichia coli, GI1790505, Length=633, Percent_Identity=37.5987361769352, Blast_Score=429, Evalue=1e-121, Organism=Escherichia coli, GI221142682, Length=546, Percent_Identity=23.4432234432234, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI145693145, Length=552, Percent_Identity=22.6449275362319, Blast_Score=92, Evalue=8e-20, Organism=Escherichia coli, GI1788107, Length=558, Percent_Identity=24.0143369175627, Blast_Score=86, Evalue=8e-18, Organism=Escherichia coli, GI1786810, Length=534, Percent_Identity=21.7228464419476, Blast_Score=83, Evalue=5e-17, Organism=Caenorhabditis elegans, GI71983001, Length=648, Percent_Identity=36.1111111111111, Blast_Score=373, Evalue=1e-103, Organism=Caenorhabditis elegans, GI71982997, Length=648, Percent_Identity=36.1111111111111, Blast_Score=372, Evalue=1e-103, Organism=Caenorhabditis elegans, GI17569507, Length=651, Percent_Identity=21.9662058371736, Blast_Score=129, Evalue=6e-30, Organism=Caenorhabditis elegans, GI17531443, Length=546, Percent_Identity=25.2747252747253, Blast_Score=121, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17559526, Length=563, Percent_Identity=23.0905861456483, Blast_Score=95, Evalue=9e-20, Organism=Caenorhabditis elegans, GI71996755, Length=561, Percent_Identity=21.5686274509804, Blast_Score=93, Evalue=4e-19, Organism=Caenorhabditis elegans, GI71985884, Length=582, Percent_Identity=21.3058419243986, Blast_Score=89, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17557194, Length=564, Percent_Identity=24.290780141844, Blast_Score=88, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17538037, Length=568, Percent_Identity=24.1197183098592, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560140, Length=532, Percent_Identity=21.4285714285714, Blast_Score=79, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6319264, Length=640, Percent_Identity=37.65625, Blast_Score=449, Evalue=1e-127, Organism=Saccharomyces cerevisiae, GI6323182, Length=637, Percent_Identity=38.7755102040816, Blast_Score=447, Evalue=1e-126, Organism=Saccharomyces cerevisiae, GI6319699, Length=371, Percent_Identity=24.7978436657682, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI21355225, Length=637, Percent_Identity=41.9152276295133, Blast_Score=498, Evalue=1e-141, Organism=Drosophila melanogaster, GI24667955, Length=654, Percent_Identity=37.0030581039755, Blast_Score=409, Evalue=1e-114, Organism=Drosophila melanogaster, GI62472339, Length=560, Percent_Identity=38.2142857142857, Blast_Score=375, Evalue=1e-104, Organism=Drosophila melanogaster, GI24667959, Length=527, Percent_Identity=37.3814041745731, Blast_Score=343, Evalue=2e-94, Organism=Drosophila melanogaster, GI21355181, Length=538, Percent_Identity=26.2081784386617, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI19922652, Length=558, Percent_Identity=24.3727598566308, Blast_Score=87, Evalue=5e-17, Organism=Drosophila melanogaster, GI21358303, Length=492, Percent_Identity=22.9674796747967, Blast_Score=77, Evalue=5e-14, Organism=Drosophila melanogaster, GI24648260, Length=367, Percent_Identity=26.7029972752044, Blast_Score=76, Evalue=6e-14, Organism=Drosophila melanogaster, GI24648257, Length=379, Percent_Identity=26.3852242744063, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI20130357, Length=387, Percent_Identity=25.0645994832041, Blast_Score=68, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR012694 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.17 [H]
Molecular weight: Translated: 69509; Mature: 69378
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAADYADFYRRSIDERDAFWAEQARLIDWQQPPQQICDWSNPPFAKWFVGGTTNLCHNAV CCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHHHH DRHLAERPLQNALVAISTETNTERAYTYAELHQEVQRMAASLQTLGVRQGDRVLIYMPMI HHHHHHCCHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHH AEAAFAMLACARIGAIHSVVFGGFASSSLASRIEDAEPTVIVSADAGSRGGKVVPYKPLL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEECCCHHHH DEAIELSAHKPAAVLLVDRGLAPAAMRAGRDHDWAALRARHMDAQVPCIWVDATQPSYTL HHHHHHCCCCCEEEEEEECCCCHHHHHCCCCCCHHHHHHHCCCCCCCEEEEECCCCCEEE YTSGTTGKPKGVQRDTGGYTVALASSMRHIFEAQPGDTYFCTSDIGWVVGHSYIIYGPLI EECCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEECCCCHHHCCCEEEEHHHH AGMTTILYEGLPVRPDAGIWWSIVEKYRVTHMFSAPTAVRVLKKQDPAYLKKYDIRSLKA HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHCCCCHHHHHHHHHHHHE LWLAGEPLDEPTAQWISDALQVPIIDNYWQTETGWPILTLCNGVQKQTSRFGSPGKAVYG EEECCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE YNVQLIDEATGEELTQPNQKGVVAIEGPLPPGCLQTVWRNDDRFVNTYWKSIPGRLVYST EEEEEEECCCCCHHCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHCCCCCEEEEE FDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEECIAGHPNVAEVAVVGVADALKGQV ECCCCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHCCCCCHHHEEEEEHHHHHCCCE AMAFAVPRDASGLTDEAARLKLEGEVMKQVDTQLGAVARPARVLFVTMLPKTRSGKLLRR EEEEECCCCCCCCCCHHHHEEECHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHH ALQAVAERRDTGDLTTMEDPVALQQIKELLG HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC >Mature Secondary Structure AADYADFYRRSIDERDAFWAEQARLIDWQQPPQQICDWSNPPFAKWFVGGTTNLCHNAV CCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHHHH DRHLAERPLQNALVAISTETNTERAYTYAELHQEVQRMAASLQTLGVRQGDRVLIYMPMI HHHHHHCCHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHH AEAAFAMLACARIGAIHSVVFGGFASSSLASRIEDAEPTVIVSADAGSRGGKVVPYKPLL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEECCCHHHH DEAIELSAHKPAAVLLVDRGLAPAAMRAGRDHDWAALRARHMDAQVPCIWVDATQPSYTL HHHHHHCCCCCEEEEEEECCCCHHHHHCCCCCCHHHHHHHCCCCCCCEEEEECCCCCEEE YTSGTTGKPKGVQRDTGGYTVALASSMRHIFEAQPGDTYFCTSDIGWVVGHSYIIYGPLI EECCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEECCCCHHHCCCEEEEHHHH AGMTTILYEGLPVRPDAGIWWSIVEKYRVTHMFSAPTAVRVLKKQDPAYLKKYDIRSLKA HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHCCCCHHHHHHHHHHHHE LWLAGEPLDEPTAQWISDALQVPIIDNYWQTETGWPILTLCNGVQKQTSRFGSPGKAVYG EEECCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE YNVQLIDEATGEELTQPNQKGVVAIEGPLPPGCLQTVWRNDDRFVNTYWKSIPGRLVYST EEEEEEECCCCCHHCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHCCCCCEEEEE FDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEECIAGHPNVAEVAVVGVADALKGQV ECCCCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHCCCCCHHHEEEEEHHHHHCCCE AMAFAVPRDASGLTDEAARLKLEGEVMKQVDTQLGAVARPARVLFVTMLPKTRSGKLLRR EEEEECCCCCCCCCCHHHHEEECHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHH ALQAVAERRDTGDLTTMEDPVALQQIKELLG HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9006051; 10411265; 11677609; 10482501 [H]