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The map label for this gene is rng [H]

Identifier: 222110912

GI number: 222110912

Start: 1824819

End: 1826306

Strand: Direct

Name: rng [H]

Synonym: Dtpsy_1719

Alternate gene names: 222110912

Gene position: 1824819-1826306 (Clockwise)

Preceding gene: 222110911

Following gene: 222110918

Centisome position: 48.06

GC content: 66.4

Gene sequence:

>1488_bases
ATGCAACAAGACATCCTCATCAACTGGTCGCCGCAGGAAACGCGCGTGGCCGTGGTCGAAAACGGCGCCGTGCAGGAACT
GCACGTGGAGCGCACGCTGGAGCGGGGCCTGGTCGGCAACGTGTACCTGGGCAAGGTCTCGCGCGTGCTGCCGGGCATGC
AATCGGCCTTCATCGACATCGGGCTGGAGCGTGCGGCCTTTCTGCACGTGGCGGACGTGTGGCACCGCCAGGAAGGCGGC
GAGGCGCCGATGTTCGCGCGCAAGAACGAACCGCCCGTGCCCATCGAGAAGCAGATCTTCGAGGGCCAGGCGCTCATGGT
GCAGGTCATCAAGGACCCCATCGGCAGCAAGGGCGCACGCCTGTCCACGCAGATCAGCATCGCCGGGCGGTTGCTGGTCT
TCCTGCCGCAGGACGACCACGTGGGCGTGTCGCAGAAGATTCCCCAGGCCGAGCGCGACGCCTTGCGCACGCGGTTGCAG
AAGCTGGTGGATGACCAGGCATCGGGCAGCAGCGGCGGCTTCATTTTGCGCACCAATGGTGAGGACGCCAGCGACGAAGA
GCTGGCCGAAGACATCGCCTACCTGCGCAAGACCTGGGCAGGCATCCGGCAGGCAGCGCTGACGCATCCGCCCACCTCGC
TGCTGTACCAGGACCTGAGCCTGCTGCAGCGTGTGCTGCGCGACCTGGCGGGCGAGCAAACGCAGAGCATCCGCATCGAT
TCGCGCGAGCAGTTCGTGGCGCTGAAGGCGTTCGGCAATGAATTCATGCCTGCGGCCGCCGCCAAGCTGCAGCTGTACAA
GGGCGAGCGCCCCATATTCGATCTGTATTCCATCGACGAGGAGATCGCCCTGGCGCTGGGCCGGCGCGTGCAGCTCAAGT
CGGGCGGCTACCTCATCGTGGACCAGACCGAGGCGCTGACCACCATCGACGTGAACACCGGCGGCTACGTGGGCGCGCGC
AACTTCGACGACACCATCTTCAAGACCAACCTGGAGGCGGCGGGCGCCATCGCGCGGCAGTTGCGCCTGCGCAACCTGGG
CGGCATCGTCATTGCCGACTTCATCGACATGCTGCGCGAGGACCACCAGGCCGCGGTGTTGGCGGAGTTCCGCAAGCAGC
TCGCGCGCGACCGGGTCAAGACCATGGTGGGCGGTTTTTCACAGCTGGGCCTGGTGGAGATGACGCGCAAGCGCACGCGC
GAATCGCTGGCGCACATGCTGTGCGAGCCGTGCCCCACGTGCCAGGGCGCGGGTCAGGTGAAGACCGCGCGCAGTGTGTG
TTACGACATCCTGCGCGAGGTGCTGCGCGAGGCACGCCAGTTCAATCCACGCGAGTTCCGCGTGGTGGCGTCCCCGCGCG
TGGTGGAGCTGTTCCTGGACGAGGAGAGCCAGCACCTGGCGGGCCTGTCGGACTTCATTGGCAAGCCGATCTCCCTGCAG
GCCGAAAGCGCCATGGGCCAGGCGCAGTACGACATCGTGCTGTTGTGA

Upstream 100 bases:

>100_bases
GGCATGCTGGCGACGATGGTGTGACGGGCGCCGGCCGCCGGTAGGGCGGCGGGCAGCGCTGGTTCTGAGGCATCATGGGC
GCCTCATCTGGCAAAAGCCC

Downstream 100 bases:

>100_bases
GTTGAGATCAAATTGGCCTCTGGCGCTTGTGGGACGGGCGCTAGCAGCTATCAAAAACATACCAACGTCGCGAGCCTGGG
TGCGCCGCGTCTATCGCCCG

Product: Rne/Rng family ribonuclease

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MQQDILINWSPQETRVAVVENGAVQELHVERTLERGLVGNVYLGKVSRVLPGMQSAFIDIGLERAAFLHVADVWHRQEGG
EAPMFARKNEPPVPIEKQIFEGQALMVQVIKDPIGSKGARLSTQISIAGRLLVFLPQDDHVGVSQKIPQAERDALRTRLQ
KLVDDQASGSSGGFILRTNGEDASDEELAEDIAYLRKTWAGIRQAALTHPPTSLLYQDLSLLQRVLRDLAGEQTQSIRID
SREQFVALKAFGNEFMPAAAAKLQLYKGERPIFDLYSIDEEIALALGRRVQLKSGGYLIVDQTEALTTIDVNTGGYVGAR
NFDDTIFKTNLEAAGAIARQLRLRNLGGIVIADFIDMLREDHQAAVLAEFRKQLARDRVKTMVGGFSQLGLVEMTRKRTR
ESLAHMLCEPCPTCQGAGQVKTARSVCYDILREVLREARQFNPREFRVVASPRVVELFLDEESQHLAGLSDFIGKPISLQ
AESAMGQAQYDIVLL

Sequences:

>Translated_495_residues
MQQDILINWSPQETRVAVVENGAVQELHVERTLERGLVGNVYLGKVSRVLPGMQSAFIDIGLERAAFLHVADVWHRQEGG
EAPMFARKNEPPVPIEKQIFEGQALMVQVIKDPIGSKGARLSTQISIAGRLLVFLPQDDHVGVSQKIPQAERDALRTRLQ
KLVDDQASGSSGGFILRTNGEDASDEELAEDIAYLRKTWAGIRQAALTHPPTSLLYQDLSLLQRVLRDLAGEQTQSIRID
SREQFVALKAFGNEFMPAAAAKLQLYKGERPIFDLYSIDEEIALALGRRVQLKSGGYLIVDQTEALTTIDVNTGGYVGAR
NFDDTIFKTNLEAAGAIARQLRLRNLGGIVIADFIDMLREDHQAAVLAEFRKQLARDRVKTMVGGFSQLGLVEMTRKRTR
ESLAHMLCEPCPTCQGAGQVKTARSVCYDILREVLREARQFNPREFRVVASPRVVELFLDEESQHLAGLSDFIGKPISLQ
AESAMGQAQYDIVLL
>Mature_495_residues
MQQDILINWSPQETRVAVVENGAVQELHVERTLERGLVGNVYLGKVSRVLPGMQSAFIDIGLERAAFLHVADVWHRQEGG
EAPMFARKNEPPVPIEKQIFEGQALMVQVIKDPIGSKGARLSTQISIAGRLLVFLPQDDHVGVSQKIPQAERDALRTRLQ
KLVDDQASGSSGGFILRTNGEDASDEELAEDIAYLRKTWAGIRQAALTHPPTSLLYQDLSLLQRVLRDLAGEQTQSIRID
SREQFVALKAFGNEFMPAAAAKLQLYKGERPIFDLYSIDEEIALALGRRVQLKSGGYLIVDQTEALTTIDVNTGGYVGAR
NFDDTIFKTNLEAAGAIARQLRLRNLGGIVIADFIDMLREDHQAAVLAEFRKQLARDRVKTMVGGFSQLGLVEMTRKRTR
ESLAHMLCEPCPTCQGAGQVKTARSVCYDILREVLREARQFNPREFRVVASPRVVELFLDEESQHLAGLSDFIGKPISLQ
AESAMGQAQYDIVLL

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=498, Percent_Identity=51.4056224899598, Blast_Score=494, Evalue=1e-141,
Organism=Escherichia coli, GI1787325, Length=467, Percent_Identity=34.9036402569593, Blast_Score=261, Evalue=6e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 54942; Mature: 54942

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQDILINWSPQETRVAVVENGAVQELHVERTLERGLVGNVYLGKVSRVLPGMQSAFIDI
CCCCEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
GLERAAFLHVADVWHRQEGGEAPMFARKNEPPVPIEKQIFEGQALMVQVIKDPIGSKGAR
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCE
LSTQISIAGRLLVFLPQDDHVGVSQKIPQAERDALRTRLQKLVDDQASGSSGGFILRTNG
EEEEEEEECEEEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
EDASDEELAEDIAYLRKTWAGIRQAALTHPPTSLLYQDLSLLQRVLRDLAGEQTQSIRID
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
SREQFVALKAFGNEFMPAAAAKLQLYKGERPIFDLYSIDEEIALALGRRVQLKSGGYLIV
CHHHEEEHHHHCCCCCCHHHHHHHEECCCCCEEHHHHCCHHHHHHHCCEEEECCCCEEEE
DQTEALTTIDVNTGGYVGARNFDDTIFKTNLEAAGAIARQLRLRNLGGIVIADFIDMLRE
ECCCCEEEEEECCCCEECCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DHQAAVLAEFRKQLARDRVKTMVGGFSQLGLVEMTRKRTRESLAHMLCEPCPTCQGAGQV
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
KTARSVCYDILREVLREARQFNPREFRVVASPRVVELFLDEESQHLAGLSDFIGKPISLQ
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCHHHHHCHHHHHCCCCEEE
AESAMGQAQYDIVLL
HHHHCCCCCEEEEEC
>Mature Secondary Structure
MQQDILINWSPQETRVAVVENGAVQELHVERTLERGLVGNVYLGKVSRVLPGMQSAFIDI
CCCCEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
GLERAAFLHVADVWHRQEGGEAPMFARKNEPPVPIEKQIFEGQALMVQVIKDPIGSKGAR
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCE
LSTQISIAGRLLVFLPQDDHVGVSQKIPQAERDALRTRLQKLVDDQASGSSGGFILRTNG
EEEEEEEECEEEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
EDASDEELAEDIAYLRKTWAGIRQAALTHPPTSLLYQDLSLLQRVLRDLAGEQTQSIRID
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
SREQFVALKAFGNEFMPAAAAKLQLYKGERPIFDLYSIDEEIALALGRRVQLKSGGYLIV
CHHHEEEHHHHCCCCCCHHHHHHHEECCCCCEEHHHHCCHHHHHHHCCEEEECCCCEEEE
DQTEALTTIDVNTGGYVGARNFDDTIFKTNLEAAGAIARQLRLRNLGGIVIADFIDMLRE
ECCCCEEEEEECCCCEECCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DHQAAVLAEFRKQLARDRVKTMVGGFSQLGLVEMTRKRTRESLAHMLCEPCPTCQGAGQV
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
KTARSVCYDILREVLREARQFNPREFRVVASPRVVELFLDEESQHLAGLSDFIGKPISLQ
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCHHHHHCHHHHHCCCCEEE
AESAMGQAQYDIVLL
HHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]