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The map label for this gene is rarD [C]

Identifier: 222110560

GI number: 222110560

Start: 1421936

End: 1422838

Strand: Direct

Name: rarD [C]

Synonym: Dtpsy_1360

Alternate gene names: 222110560

Gene position: 1421936-1422838 (Clockwise)

Preceding gene: 222110558

Following gene: 222110561

Centisome position: 37.45

GC content: 70.65

Gene sequence:

>903_bases
GTGATCCAAGGTCTTGTTGCGTCCATCGTCGCGTCCGTTCTGTTCGGCGCCATGTATTACCTGGCACCGGCGCTGGCGCC
GCTGGATGGCGAGCAAATCTTCGGCTGGCGCGTGCTGTGCACGCTGCCGTTCACCACGGCGCTGCTGCTGGCGCGCGGGC
AGTGGCCGCGCGTGCGCCTGCTGGCTGCGCGCGCGTGGCGGCAGCCGCTGCTGGCGCTGGGGCTGCTGGCCAGCGCCGCC
ATGCTGGGCGTGCAGCTGTGGCTGTTTTTATGGGCGCCGCTGCACGGGCGGGCACTGCCGGTGTCGCTGGGCTACTTCCT
GCTGCCGTTGGTGATGGTGCTGGCCGGGCGGGTGCTGTACCGCGAGCGGCTGTCGCACCTGCAGTGGCTGGCCACGGCAC
TGGCGGGCGCGGGTGTGCTGCACGAGGTGCTGCGCGCCGGCGGCATGTCGTGGGAGACCTGGCTGGTCGCGCTGGGCTAC
ACCGCGTATTTCGTGCTGCGCCGGCGCCTGGCCACCGACCACCTGGGCGGCCATTGGCTGGACATGCTGCTGCTGGTGCC
CGCGGCGCTGTGGTTCGTGGTGCGCGCGCCGTCGTCCCTTCCGCTGGTGCTGGAGCATGCGCACCTATGGGCGATGGTGC
CCGTCCTGGGCGTGCTCAGCGCCGTGGCGCTGGCGTTGTACATGGCCGCCAGCCGCCTGCTGCCGCTGGGGTTGTTTGGT
CTCTTGAGCTATGTGGAGCCGGTGCTGCTGGCACTGGTGGCGCTGGCGCTGGGCGAGAGCATCGGCGCGGCGCAGTGGCC
CACCTACGGCCCCATTTTCGCCGCCGTGGCTCTGCTGGTGCTGGACGGCGCACTGCGCCTGCGCCGTCCAGCCGTGCAGG
TTCAAGACAAAAAACCGCTCTAG

Upstream 100 bases:

>100_bases
GTTCTCATCCGGATGCGTGCCTGTTGTTGTCTTGCCCGAGGCGGCGACGCCGTGTTGTCGCCGGGTTTCCCGCATCGTTT
CTTGTCCACCTGCTGCCGTT

Downstream 100 bases:

>100_bases
CGCCCGTCCATCAAGCGCTTGCAGCTATTAAAATCGATGCAAACGGTGCCATTCGCAGCACCGCACAGCCACCCGAGGGA
GCCCCCACATGCACGCCACC

Product: rard protein, dmt superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MIQGLVASIVASVLFGAMYYLAPALAPLDGEQIFGWRVLCTLPFTTALLLARGQWPRVRLLAARAWRQPLLALGLLASAA
MLGVQLWLFLWAPLHGRALPVSLGYFLLPLVMVLAGRVLYRERLSHLQWLATALAGAGVLHEVLRAGGMSWETWLVALGY
TAYFVLRRRLATDHLGGHWLDMLLLVPAALWFVVRAPSSLPLVLEHAHLWAMVPVLGVLSAVALALYMAASRLLPLGLFG
LLSYVEPVLLALVALALGESIGAAQWPTYGPIFAAVALLVLDGALRLRRPAVQVQDKKPL

Sequences:

>Translated_300_residues
MIQGLVASIVASVLFGAMYYLAPALAPLDGEQIFGWRVLCTLPFTTALLLARGQWPRVRLLAARAWRQPLLALGLLASAA
MLGVQLWLFLWAPLHGRALPVSLGYFLLPLVMVLAGRVLYRERLSHLQWLATALAGAGVLHEVLRAGGMSWETWLVALGY
TAYFVLRRRLATDHLGGHWLDMLLLVPAALWFVVRAPSSLPLVLEHAHLWAMVPVLGVLSAVALALYMAASRLLPLGLFG
LLSYVEPVLLALVALALGESIGAAQWPTYGPIFAAVALLVLDGALRLRRPAVQVQDKKPL
>Mature_300_residues
MIQGLVASIVASVLFGAMYYLAPALAPLDGEQIFGWRVLCTLPFTTALLLARGQWPRVRLLAARAWRQPLLALGLLASAA
MLGVQLWLFLWAPLHGRALPVSLGYFLLPLVMVLAGRVLYRERLSHLQWLATALAGAGVLHEVLRAGGMSWETWLVALGY
TAYFVLRRRLATDHLGGHWLDMLLLVPAALWFVVRAPSSLPLVLEHAHLWAMVPVLGVLSAVALALYMAASRLLPLGLFG
LLSYVEPVLLALVALALGESIGAAQWPTYGPIFAAVALLVLDGALRLRRPAVQVQDKKPL

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=285, Percent_Identity=29.1228070175439, Blast_Score=97, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32618; Mature: 32618

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQGLVASIVASVLFGAMYYLAPALAPLDGEQIFGWRVLCTLPFTTALLLARGQWPRVRL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
LAARAWRQPLLALGLLASAAMLGVQLWLFLWAPLHGRALPVSLGYFLLPLVMVLAGRVLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RERLSHLQWLATALAGAGVLHEVLRAGGMSWETWLVALGYTAYFVLRRRLATDHLGGHWL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
DMLLLVPAALWFVVRAPSSLPLVLEHAHLWAMVPVLGVLSAVALALYMAASRLLPLGLFG
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSYVEPVLLALVALALGESIGAAQWPTYGPIFAAVALLVLDGALRLRRPAVQVQDKKPL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MIQGLVASIVASVLFGAMYYLAPALAPLDGEQIFGWRVLCTLPFTTALLLARGQWPRVRL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
LAARAWRQPLLALGLLASAAMLGVQLWLFLWAPLHGRALPVSLGYFLLPLVMVLAGRVLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RERLSHLQWLATALAGAGVLHEVLRAGGMSWETWLVALGYTAYFVLRRRLATDHLGGHWL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
DMLLLVPAALWFVVRAPSSLPLVLEHAHLWAMVPVLGVLSAVALALYMAASRLLPLGLFG
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSYVEPVLLALVALALGESIGAAQWPTYGPIFAAVALLVLDGALRLRRPAVQVQDKKPL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]