| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222110532
Identifier: 222110532
GI number: 222110532
Start: 1390026
End: 1391231
Strand: Direct
Name: 222110532
Synonym: Dtpsy_1331
Alternate gene names: NA
Gene position: 1390026-1391231 (Clockwise)
Preceding gene: 222110531
Following gene: 222110533
Centisome position: 36.61
GC content: 62.27
Gene sequence:
>1206_bases ATGAGCCGCGGAGGTATTCAAGGCTTTGAGAGTGAGCGCCTCAGTCAGATTCTTGCCGCGAGGCGTTTGAGCCAGGCGCA ACTTGCCTCGCTGGTCGGCGTGTCCCCCGCAACGGTCAGCAAATGGCGTTCGGGCAATCAGGCCCCCGAACGTGAAACCC TGGAGCGTCTTGCCGGCGTGGTCAATGTCACGCCTGAATGGTTCACCCGGGCGCCCTCTGCCAAGGTGTCGCTGCCGCTG TTTCGTAGCAATGCGTCCGCCCACGTGGCGGCACGTGCGATGCTGGAAGCGCGCATGGAGTGGGCGCAGGACGTCGCGCT CGCGTTGTCGGAGTTCGTGGACTATCCGACACTGAATTTGCCGATCCGGCAGTTCAAAGAGCCCGACGAGATCACGCCTG ACGAGATTGAGCTGGCGGCGAGCGAGTGCCGCGATCTTTGGCGTATCGGCCGCACGGCGGTGCCGGACTTGGCGCTGGCC ATTGAAGGCGCTGGCGTCGTCCTGATCCGCGAGGAAACTGGCATTTCGCAGATCGAGGGCCTGTCGGCATGGAGCGATGC GCTGGGGCGTCCGCTGGTCTTGCTCTCGGCCGACAAGGATAACGGCTATCGAAGCCGCTTCGACTTGGCGCACGAACTCG GCCACCTGATCCTGCATCGGTTCATTCCCCGACCGACTGAGCGTGACCGCCATAAGCAGCTGGAACAGCAGGCCCATCGC TTTGCGGGCGCGTTCCTGCTGCCGGCGGAAACATTCGCGAGTGAGGTCCGCACGCCAGTCACGCTGGACGATCTTCTCTT GCTCAAACGCAGATGGGGTGTTTCCGTCGCGGCGATCGTGATGCGTCTGCGTGCGTTGAAGATTCTCGATGAAGAGGCGG CGCAGTCACTCTTCAAACGACGGTCCGCACGTTGGGGCGCCAAGTCCGAGCCGGGCGATGGCGATAGGTCGCCAGAACGG CCGCGCCTGCTACGTCGAACGATCGATCTTCTTGTCGAGGAGAACGTGATGCCCCTCGACTCGATCCCCAGGCACATTGG CTTGGCGGCCCATGACATTGAGATGCTGGCGGGCTTGTCGGAAGGATACTTTCAGGGCAAACCCAAGGTTGTGCAGTTGG CTCGTTTGCGTTCAGCGCCCAGCCCGGATGCACCTGTTGCCACGGAAGGCAATGTCGTGCCGTTTAGATTTACGCCGAAG CGTTGA
Upstream 100 bases:
>100_bases CGTTCCTGCAGCGGTACGAGCAAAAGCCTGCGGCGCAAGACGATTTGGCCAAGCCCAAGCTCAAGAAGATCAAGAAGCAG AGCAACGACGGCAGCGTGCC
Downstream 100 bases:
>100_bases TCGGCGCGCCCATGGAGGTCAATGCCATTTCGATCGAGCCCTCACTAGTTATGTTGCAGGACAACGGCATCTATTGTGGC AAGAACCGCCAACTCATTGA
Product: hypothetical protein
Products: NA
Alternate protein names: Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Domain-Containing Protein; Zn Peptidase; Transcriptional Regulator HTH_3 Family; Conserved Domain Protein; XRE Family Transcriptional Regulator; Phage-Like Protein; Regulatory Protein; Transcription Regulator; DNA-Bining Transcriptional Regulator; Adenine Deaminase
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MSRGGIQGFESERLSQILAARRLSQAQLASLVGVSPATVSKWRSGNQAPERETLERLAGVVNVTPEWFTRAPSAKVSLPL FRSNASAHVAARAMLEARMEWAQDVALALSEFVDYPTLNLPIRQFKEPDEITPDEIELAASECRDLWRIGRTAVPDLALA IEGAGVVLIREETGISQIEGLSAWSDALGRPLVLLSADKDNGYRSRFDLAHELGHLILHRFIPRPTERDRHKQLEQQAHR FAGAFLLPAETFASEVRTPVTLDDLLLLKRRWGVSVAAIVMRLRALKILDEEAAQSLFKRRSARWGAKSEPGDGDRSPER PRLLRRTIDLLVEENVMPLDSIPRHIGLAAHDIEMLAGLSEGYFQGKPKVVQLARLRSAPSPDAPVATEGNVVPFRFTPK R
Sequences:
>Translated_401_residues MSRGGIQGFESERLSQILAARRLSQAQLASLVGVSPATVSKWRSGNQAPERETLERLAGVVNVTPEWFTRAPSAKVSLPL FRSNASAHVAARAMLEARMEWAQDVALALSEFVDYPTLNLPIRQFKEPDEITPDEIELAASECRDLWRIGRTAVPDLALA IEGAGVVLIREETGISQIEGLSAWSDALGRPLVLLSADKDNGYRSRFDLAHELGHLILHRFIPRPTERDRHKQLEQQAHR FAGAFLLPAETFASEVRTPVTLDDLLLLKRRWGVSVAAIVMRLRALKILDEEAAQSLFKRRSARWGAKSEPGDGDRSPER PRLLRRTIDLLVEENVMPLDSIPRHIGLAAHDIEMLAGLSEGYFQGKPKVVQLARLRSAPSPDAPVATEGNVVPFRFTPK R >Mature_400_residues SRGGIQGFESERLSQILAARRLSQAQLASLVGVSPATVSKWRSGNQAPERETLERLAGVVNVTPEWFTRAPSAKVSLPLF RSNASAHVAARAMLEARMEWAQDVALALSEFVDYPTLNLPIRQFKEPDEITPDEIELAASECRDLWRIGRTAVPDLALAI EGAGVVLIREETGISQIEGLSAWSDALGRPLVLLSADKDNGYRSRFDLAHELGHLILHRFIPRPTERDRHKQLEQQAHRF AGAFLLPAETFASEVRTPVTLDDLLLLKRRWGVSVAAIVMRLRALKILDEEAAQSLFKRRSARWGAKSEPGDGDRSPERP RLLRRTIDLLVEENVMPLDSIPRHIGLAAHDIEMLAGLSEGYFQGKPKVVQLARLRSAPSPDAPVATEGNVVPFRFTPKR
Specific function: Unknown
COG id: COG2856
COG function: function code E; Predicted Zn peptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44533; Mature: 44401
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRGGIQGFESERLSQILAARRLSQAQLASLVGVSPATVSKWRSGNQAPERETLERLAGV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHH VNVTPEWFTRAPSAKVSLPLFRSNASAHVAARAMLEARMEWAQDVALALSEFVDYPTLNL HCCCHHHHHCCCCCCEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PIRQFKEPDEITPDEIELAASECRDLWRIGRTAVPDLALAIEGAGVVLIREETGISQIEG CHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCCEEEEECCCCCHHHHC LSAWSDALGRPLVLLSADKDNGYRSRFDLAHELGHLILHRFIPRPTERDRHKQLEQQAHR CHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH FAGAFLLPAETFASEVRTPVTLDDLLLLKRRWGVSVAAIVMRLRALKILDEEAAQSLFKR HHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH RSARWGAKSEPGDGDRSPERPRLLRRTIDLLVEENVMPLDSIPRHIGLAAHDIEMLAGLS HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCC EGYFQGKPKVVQLARLRSAPSPDAPVATEGNVVPFRFTPKR CHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC >Mature Secondary Structure SRGGIQGFESERLSQILAARRLSQAQLASLVGVSPATVSKWRSGNQAPERETLERLAGV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHH VNVTPEWFTRAPSAKVSLPLFRSNASAHVAARAMLEARMEWAQDVALALSEFVDYPTLNL HCCCHHHHHCCCCCCEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PIRQFKEPDEITPDEIELAASECRDLWRIGRTAVPDLALAIEGAGVVLIREETGISQIEG CHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCCEEEEECCCCCHHHHC LSAWSDALGRPLVLLSADKDNGYRSRFDLAHELGHLILHRFIPRPTERDRHKQLEQQAHR CHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH FAGAFLLPAETFASEVRTPVTLDDLLLLKRRWGVSVAAIVMRLRALKILDEEAAQSLFKR HHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH RSARWGAKSEPGDGDRSPERPRLLRRTIDLLVEENVMPLDSIPRHIGLAAHDIEMLAGLS HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCC EGYFQGKPKVVQLARLRSAPSPDAPVATEGNVVPFRFTPKR CHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA