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The map label for this gene is ydfH [C]

Identifier: 222110260

GI number: 222110260

Start: 1088491

End: 1089183

Strand: Direct

Name: ydfH [C]

Synonym: Dtpsy_1047

Alternate gene names: 222110260

Gene position: 1088491-1089183 (Clockwise)

Preceding gene: 222110258

Following gene: 222110261

Centisome position: 28.67

GC content: 68.98

Gene sequence:

>693_bases
ATGCCCATACTGACCAAGTTCCGCCTTGACCGTTCGCGCCTGGCCGCCCCGCAGGTCTTCGAAAGCCTGCGCGAGGCCAT
TCTGACGCTGGAGCTGGTGCCCGGCGCGATGCTGGTGCGCAGCGACCTGGCCGGGCAATTCGGCGTGAGCCAGACGCCCA
TCCGCGAGGCGCTGCTGCGCCTGGAAGAGGAGGGCCTGGTGGAAGTCTTTCCCCAGCACGCCACGCTGGTCAGCCGCATC
GACGTGGCGGCCGCGCGCGAAGCGCACTTCCTGCGCCGCTCCATCGAGCTGGAGATCGTGCGCACGCTGGCGCTGCAGCC
GCCCCCCGGCCTGGTGGTGCAACTGCAGGCGCAGTGCGCACTGCAGGAATCGCTGGCCGCCGCGCAGCGCTATGACGACT
TTCTGGGAGCGGACCATGGCTTTCACCGCCTGATGTATGAGGCGGCCGGCGTCATGGGCCTGTGGGCGCTGGTGCGCCGC
TACTCCGGCCATGTGGATCGCTTGCGCCGCCTGCACCTGCCCACCGCAGGCAAGACGGGCGTCATCATGCGCCAGCATCG
GGCCATCCTCGACGCCATTGACCGGCAGAACGCTCCCGCGGCCCAGGAGGCGTTGCGCGAGCACCTGTCGGGCACGCTCA
GCGCGGTGGACAACGTATGCGCCCAGCATCCGGATTACATCCTGCAGGGTTAG

Upstream 100 bases:

>100_bases
AAGTGTGTGGACAGAGGGAGAGGCGGGCACGGCCGTGAAGGCGCGCCATTTGAAATATTGGAACACTAATATATTAGTGC
ACGAATGCGAGAATCCACGT

Downstream 100 bases:

>100_bases
GGACAATCCCTGAGCCATTTCAGCGGCCGTTGCCAGAAAAGTGCATACACTTCCTGTTCACAAAACGGGTCGCAGCGGTG
CCCCGGCAGCTTCCTGCCAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MPILTKFRLDRSRLAAPQVFESLREAILTLELVPGAMLVRSDLAGQFGVSQTPIREALLRLEEEGLVEVFPQHATLVSRI
DVAAAREAHFLRRSIELEIVRTLALQPPPGLVVQLQAQCALQESLAAAQRYDDFLGADHGFHRLMYEAAGVMGLWALVRR
YSGHVDRLRRLHLPTAGKTGVIMRQHRAILDAIDRQNAPAAQEALREHLSGTLSAVDNVCAQHPDYILQG

Sequences:

>Translated_230_residues
MPILTKFRLDRSRLAAPQVFESLREAILTLELVPGAMLVRSDLAGQFGVSQTPIREALLRLEEEGLVEVFPQHATLVSRI
DVAAAREAHFLRRSIELEIVRTLALQPPPGLVVQLQAQCALQESLAAAQRYDDFLGADHGFHRLMYEAAGVMGLWALVRR
YSGHVDRLRRLHLPTAGKTGVIMRQHRAILDAIDRQNAPAAQEALREHLSGTLSAVDNVCAQHPDYILQG
>Mature_229_residues
PILTKFRLDRSRLAAPQVFESLREAILTLELVPGAMLVRSDLAGQFGVSQTPIREALLRLEEEGLVEVFPQHATLVSRID
VAAAREAHFLRRSIELEIVRTLALQPPPGLVVQLQAQCALQESLAAAQRYDDFLGADHGFHRLMYEAAGVMGLWALVRRY
SGHVDRLRRLHLPTAGKTGVIMRQHRAILDAIDRQNAPAAQEALREHLSGTLSAVDNVCAQHPDYILQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=210, Percent_Identity=27.1428571428571, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25529; Mature: 25398

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPILTKFRLDRSRLAAPQVFESLREAILTLELVPGAMLVRSDLAGQFGVSQTPIREALLR
CCCCHHHHCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHH
LEEEGLVEVFPQHATLVSRIDVAAAREAHFLRRSIELEIVRTLALQPPPGLVVQLQAQCA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHH
LQESLAAAQRYDDFLGADHGFHRLMYEAAGVMGLWALVRRYSGHVDRLRRLHLPTAGKTG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
VIMRQHRAILDAIDRQNAPAAQEALREHLSGTLSAVDNVCAQHPDYILQG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure 
PILTKFRLDRSRLAAPQVFESLREAILTLELVPGAMLVRSDLAGQFGVSQTPIREALLR
CCCHHHHCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHH
LEEEGLVEVFPQHATLVSRIDVAAAREAHFLRRSIELEIVRTLALQPPPGLVVQLQAQCA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHH
LQESLAAAQRYDDFLGADHGFHRLMYEAAGVMGLWALVRRYSGHVDRLRRLHLPTAGKTG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
VIMRQHRAILDAIDRQNAPAAQEALREHLSGTLSAVDNVCAQHPDYILQG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]