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The map label for this gene is yvrC [H]

Identifier: 222110229

GI number: 222110229

Start: 1056064

End: 1056954

Strand: Direct

Name: yvrC [H]

Synonym: Dtpsy_1015

Alternate gene names: 222110229

Gene position: 1056064-1056954 (Clockwise)

Preceding gene: 222110228

Following gene: 222110230

Centisome position: 27.82

GC content: 72.05

Gene sequence:

>891_bases
ATGATGCCTCTTCGCTGGCGCCGCCAGCTTGCTGCCGCCGGCTGGATGCTGGGTCTGCTGCTGGCCTTGCCCAGCGCCCA
CGCGGTAACCATCACCGACGACCGGGGCCGCGCGCTGCGGTTCGACCAGCCGCCCCAGCGCATCGTGAGCCTGCTGCCGT
CGCTGACCGAGAGCGTGTGCGAGCTGCAGCGCTGTGAGCGCCTGGTGGGGGTGGACCGCTACTCCAACTGGCCCGCGTCC
GTGCGGCGCCTGCCCCAGGTGGGCGGCGGACTGGACCCGAACATCGAGGCCATCGTCGCGCTGCGCCCGGACGTGGTACT
GCTGTCCGTCAGCAGCCGCGTCAGCGACCGGCTGGAGGCGCTGGGCGTGAAGGTGCTGGCGCTGGACCACAAGACCCATG
CGGACGTGCGCCGCGTGCTGGGGGTGCTGGGTGAACTGCTGGCCGTTCCGCCGGAGCACGGCGCGGAGCGCGTGTGGCGC
GTGATCGATGCCGCCGTGCAAGCCGCCGCGCAGTCGCTGCCGCAGCGCGCGCGCGGGGCGCGGGTGTTCTTCGAGGTCAG
CCGCGGCCCCTATGCGGCGGGGGCCAGTTCGTTCATCAGCGAGACGCTGGTGCGCCTGGGCGCGCGCAACGTGGTCCCGC
CCGAGCTGGGGCCCTTTCCGCGTCTCAATCCCGAGTTCGTCCTGCGCGCACAGCCCGACGTACTGATGGTGGCCAACCGC
AGCATGCAACCCATGACCCAATACCCGGGGTGGAACCACCTGGCCGCGGTCAAGGCGGGCCGCGTGTGCGACTTCGGGCC
CGAACTGTCAGACGTGGTGGTGCGCCCCGGCCCGCGCATGGCCGAGGCCGCGCGCATCATGGCCCGCTGCCTGGCGGAGA
AGTACGAATGA

Upstream 100 bases:

>100_bases
TCGTGGACGCGCTGGGCGCCCTGAACCAGCGCGCGGCGGCAGCCTGCCAGCGCGTCACGCTGATGGCGGCGGGCCTGCCG
CTTACCCTGAAGGACGTACC

Downstream 100 bases:

>100_bases
GCGCGCGCCTCCCGCAGCCCTCTACCATGGTGGCGACCACCGCCATGCCAGCAACCTATGCCACCTCCTTGCACCCCGAC
GCCAGCGGCCGCCGCGCGCG

Product: periplasmic-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MMPLRWRRQLAAAGWMLGLLLALPSAHAVTITDDRGRALRFDQPPQRIVSLLPSLTESVCELQRCERLVGVDRYSNWPAS
VRRLPQVGGGLDPNIEAIVALRPDVVLLSVSSRVSDRLEALGVKVLALDHKTHADVRRVLGVLGELLAVPPEHGAERVWR
VIDAAVQAAAQSLPQRARGARVFFEVSRGPYAAGASSFISETLVRLGARNVVPPELGPFPRLNPEFVLRAQPDVLMVANR
SMQPMTQYPGWNHLAAVKAGRVCDFGPELSDVVVRPGPRMAEAARIMARCLAEKYE

Sequences:

>Translated_296_residues
MMPLRWRRQLAAAGWMLGLLLALPSAHAVTITDDRGRALRFDQPPQRIVSLLPSLTESVCELQRCERLVGVDRYSNWPAS
VRRLPQVGGGLDPNIEAIVALRPDVVLLSVSSRVSDRLEALGVKVLALDHKTHADVRRVLGVLGELLAVPPEHGAERVWR
VIDAAVQAAAQSLPQRARGARVFFEVSRGPYAAGASSFISETLVRLGARNVVPPELGPFPRLNPEFVLRAQPDVLMVANR
SMQPMTQYPGWNHLAAVKAGRVCDFGPELSDVVVRPGPRMAEAARIMARCLAEKYE
>Mature_296_residues
MMPLRWRRQLAAAGWMLGLLLALPSAHAVTITDDRGRALRFDQPPQRIVSLLPSLTESVCELQRCERLVGVDRYSNWPAS
VRRLPQVGGGLDPNIEAIVALRPDVVLLSVSSRVSDRLEALGVKVLALDHKTHADVRRVLGVLGELLAVPPEHGAERVWR
VIDAAVQAAAQSLPQRARGARVFFEVSRGPYAAGASSFISETLVRLGARNVVPPELGPFPRLNPEFVLRAQPDVLMVANR
SMQPMTQYPGWNHLAAVKAGRVCDFGPELSDVVVRPGPRMAEAARIMARCLAEKYE

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=253, Percent_Identity=25.6916996047431, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 32457; Mature: 32457

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPLRWRRQLAAAGWMLGLLLALPSAHAVTITDDRGRALRFDQPPQRIVSLLPSLTESVC
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHH
ELQRCERLVGVDRYSNWPASVRRLPQVGGGLDPNIEAIVALRPDVVLLSVSSRVSDRLEA
HHHHHHHHHCCHHCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCEEEEECHHHHHHHHHH
LGVKVLALDHKTHADVRRVLGVLGELLAVPPEHGAERVWRVIDAAVQAAAQSLPQRARGA
HCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
RVFFEVSRGPYAAGASSFISETLVRLGARNVVPPELGPFPRLNPEFVLRAQPDVLMVANR
EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECC
SMQPMTQYPGWNHLAAVKAGRVCDFGPELSDVVVRPGPRMAEAARIMARCLAEKYE
CCCCHHHCCCCCHHHHHHCCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMPLRWRRQLAAAGWMLGLLLALPSAHAVTITDDRGRALRFDQPPQRIVSLLPSLTESVC
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHH
ELQRCERLVGVDRYSNWPASVRRLPQVGGGLDPNIEAIVALRPDVVLLSVSSRVSDRLEA
HHHHHHHHHCCHHCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCEEEEECHHHHHHHHHH
LGVKVLALDHKTHADVRRVLGVLGELLAVPPEHGAERVWRVIDAAVQAAAQSLPQRARGA
HCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
RVFFEVSRGPYAAGASSFISETLVRLGARNVVPPELGPFPRLNPEFVLRAQPDVLMVANR
EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECC
SMQPMTQYPGWNHLAAVKAGRVCDFGPELSDVVVRPGPRMAEAARIMARCLAEKYE
CCCCHHHCCCCCHHHHHHCCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]